PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000485895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HSF | ||||||||
Protein Properties | Length: 85aa MW: 9631.98 Da PI: 10.2853 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 42 | 2.5e-13 | 17 | 58 | 40 | 90 |
THHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 40 vLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 +Lpk+Fk +nf+SF+ QLn+YgF kv+ ++ weF+++ F+ k MDP0000485895 17 LLPKHFKDNNFSSFILQLNTYGFIKVDPDR---------WEFANERFQGRK 58 79*************************999.........********8654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.3E-5 | 1 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.2E-7 | 17 | 29 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.63E-10 | 17 | 56 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.5E-10 | 17 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.0E-14 | 17 | 56 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 5.2E-7 | 30 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MLGKASLFRT CTNSPGLLPK HFKDNNFSSF ILQLNTYGFI KVDPDRWEFA NERFQGRKRW 60 ATIIRAQGES EVAKFISDAT TRCG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009361628.1 | 3e-19 | PREDICTED: heat stress transcription factor A-2-like | ||||
Refseq | XP_009361629.1 | 3e-19 | PREDICTED: heat stress transcription factor A-2-like | ||||
Swissprot | O81821 | 1e-16 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | A0A498KFB6 | 2e-17 | A0A498KFB6_MALDO; Uncharacterized protein | ||||
STRING | XP_009361628.1 | 1e-18 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1612 | 33 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 5e-19 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000485895 |
Publications ? help Back to Top | |||
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