PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000485262

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 82aa MW: 9009.47 Da PI: 8.6184

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000485262	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	52.6	1.4e-16	2	63	1	57
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeereda 57 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ + ++++a++e++r+ + MDP0000485262 2 SCNGCRVLRKGCSDNCILRQCLqwmedPQAQAHATVFVAKFFGRAGLFSFINAVSESQRPGI 63 6*********************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.819	1	81	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-13	2	61	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MSCNGCRVLR KGCSDNCILR QCLQWMEDPQ AQAHATVFVA KFFGRAGLFS FINAVSESQR 60 PGIDNIFGYQ IKIKVCAYSI G*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008373050.2	2e-39	LOB domain-containing protein 37-like
Swissprot	Q9SN23	5e-32	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A498IYM8	2e-46	A0A498IYM8_MALDO; Uncharacterized protein
STRING	XP_008373048.1	6e-39	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20233	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-34	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	MDP0000485262