PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000484847
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 234aa    MW: 25991.2 Da    PI: 6.341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000484847genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-133278555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   h   Er RR++++s f++L  llP++      K +K++i+ +A++YIksL+
  MDP0000484847 32 HTWTERERRKKMRSMFSNLHALLPQL----PAKADKSTIVDEAIRYIKSLE 78
                   6668*********************6....39*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.1572777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-142987IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-143282No hitNo description
Gene3DG3DSA:4.10.280.103.7E-143287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-103278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-93583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048737.43E-4156195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEQKEVVIKE SSGKVGDRDR DGXGDESDHG VHTWTERERR KKMRSMFSNL HALLPQLPAK  60
ADKSTIVDEA IRYIKSLEHT LQTTQTQGLD KFSALTASNT ELTCDTREAF LADHFHQGPP  120
TSNNLALPAS LFPPPASFQT WFSPNFVMNM SGNDAQISVC SPPKPGLLTT MFYILEKHKL  180
DVVSAHVSSD RYRCMYMIHA HAGAACDNFP EALSVEDIFK LAAGEMNLWL LSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008367662.21e-172transcription factor bHLH95
TrEMBLA0A498HV621e-136A0A498HV62_MALDO; Uncharacterized protein
STRINGXP_008393789.11e-175(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-45bHLH family protein