PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000480547 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 256aa MW: 29123.7 Da PI: 8.459 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.4e-30 | 195 | 253 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YY+C+ gC+vkk+ver++edp++v++tY g Hnh+ MDP0000480547 195 LDDGFRWRKYGKKKVKSSPNPRNYYKCSVGGCHVKKRVERDREDPRFVITTYDGVHNHP 253 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.4E-32 | 181 | 253 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-26 | 188 | 253 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.274 | 190 | 255 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.2E-33 | 195 | 254 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-23 | 196 | 253 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEEEIAELGL GXGSVNSKEE DVAVTIAGLR EKSRSRRTKH DQEQQDTIKI KNTINGSKKM 60 KRCXEKQEKR IEEETSDWTW SNHEPETFQG TKSTHKSSFG MSVESPETND FSGXLNFEFS 120 EYLMIRKWLD EDPSFVGSEF SVQXSGFRAN EVGESGARSS QPGGSTIRGX XGSSRERQEA 180 RERVAFKTKS EVEILDDGFR WRKYGKKKVK SSPNPRNYYK CSVGGCHVKK RVERDREDPR 240 FVITTYDGVH NHPGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-25 | 185 | 252 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-25 | 185 | 252 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.25503 | 1e-168 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028962628.1 | 1e-106 | probable WRKY transcription factor 50 | ||||
Swissprot | Q8VWQ5 | 2e-40 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | A0A498JCM7 | 1e-105 | A0A498JCM7_MALDO; Uncharacterized protein | ||||
STRING | XP_009334707.1 | 5e-99 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 3e-41 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000480547 |
Publications ? help Back to Top | |||
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