PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000480293
Common NameC2H2L8
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 480aa    MW: 53033.3 Da    PI: 9.42
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000480293genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056587123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  MDP0000480293 65 FVCEICNKGFQRDQNLQLHRRGH 87
                   89*******************88 PP
2zf-C2H2120.00064142164123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H +++
  MDP0000480293 142 WKCEKCSKKYAVQSDWKAHSKVC 164
                    58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-76487No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.6E-56587IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496587IPR007087Zinc finger, C2H2
SMARTSM003550.0176587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM0035599107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4130162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.98E-7137162No hitNo description
SMARTSM00355140142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSEDXRLVPS IITGFXQEPD SSPNPNPNTN NQLKRKRSLP GTPGKYPDAE VIAMSPKSLM  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSKTE VIRKKVYVCP EKTCVHHEPS  120
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKVCGTREYR CDCGTLFSRK  180
DSFITHRAFC DALAAEQSAR FCSAPTTNNI NPSFMNGSIA NNTHKPQRIP HFIPMFQPEF  240
AGSDHLAANN HLSSNAFIPE MXQTASMDMF GSSSSSQMQW LINNNKFVEE SSFANANSLS  300
MSSPSLLRGV LKEDEESKGS FSETISTTTN TSFYTNNNNK QNHHHHHQPM SATALLQKAA  360
RMGSTTSNNN NPATTFNDTT LNFNDMVNST SSSSTQGATI EDGSLFLSNK HLMMPAGAAA  420
MTKQGTSEQS SLTRDFLGVG GGDAIFGGGX PFFQQELAKL ASMSDLSQYT STTTSSRHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34138209372Zinc finger protein JACKDAW
5b3h_F5e-34138209372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193104KQRSKTEVIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.131600.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008359126.20.0zinc finger protein BALDIBIS
RefseqXP_008359127.20.0zinc finger protein BALDIBIS
RefseqXP_017184323.20.0zinc finger protein BALDIBIS
TrEMBLD9ZIU40.0D9ZIU4_MALDO; C2H2L domain class transcription factor
STRINGXP_008359126.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-99C2H2-like zinc finger protein