PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000474039
Common NameC3HL5
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 737aa    MW: 79954.3 Da    PI: 6.5928
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000474039genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07307327526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C++f++ G C++Gd C +aHg
  MDP0000474039 307 PCPDFRK-GACRRGDMCEYAHG 327
                    8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.1E-1840181IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.06E-1845180IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-1083155IPR020683Ankyrin repeat-containing domain
CDDcd002041.41E-1586165No hitNo description
PROSITE profilePS5029717.13187180IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003387117IPR002110Ankyrin repeat
PROSITE profilePS5008810.98122157IPR002110Ankyrin repeat
SMARTSM002488.5E-5122154IPR002110Ankyrin repeat
SMARTSM003564.0E-6302328IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-5307327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582307329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4307329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4335365IPR000571Zinc finger, CCCH-type
SMARTSM0035668337360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MCNGSDQIKL NSSPAASLIS VDESRLSNTA MNHLTVETED AFASLLELAA NNDIESFKRS  60
IEQDPSAIDE IGLWYCRQKG SKQMVNEQRT PLMVAATYGS IDVMKLILSL SDADVNQACG  120
RDRSTALHCA ASGGAENAVD CVKLLLGAGA DPNLLDANGH RPIDVIVVPP RLQNVKLALE  180
ELLVINGTAG EKTLTVSTRT IHSTSPPLSA SPENGSPSAL DFTCSPTKSK FYNSLSSASE  240
KKEYPVDPSL PDIKNSIYST DEFRMYSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK  300
FHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTSCA RRVCFFAHTT  360
EELRPLYVST GSAVPSPRSS TSGASAMDFA AAMSLLPGSP SSVNVMSPSP FTPPMSPSAN  420
GMSHSSLGWP QPNVPALHLP GSNLQSSRLR SSLCARDMPA DDFDLLPEFD MQQQQLQQQQ  480
LLNELSCLSQ PSLSNNSLNR SGRRTTLTPS NLDDIFSAES LSPRYSDQSL QSGVFSPTHK  540
SAVLNQFQHQ QSILSPIHTT FSPKTADHAL LQASYGGPSS GRMSPRNVEP ISPMGPRVSM  600
LAQREKQQQF RSLSSRELGS NSASIVGSSP NSWSKWGSSN GKPDWAVSTD ELGKLRRSSS  660
FELGNNGEEP DLSWVQSLVK ESPTDIKEKQ TSSSAVTATG SSNNGPSANS QREAVDHAVL  720
GAWIDQMHLD LVAQQN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.98100.0bud| cell culture| fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2535640.0FM253564.1 Prunus cerasifera BAC insert containing Ma gene, ma1 susceptible allele, clone 40K9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946324.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLD9ZIV20.0D9ZIV2_MALDO; C3HL domain class transcription factor
STRINGXP_009340782.10.0(Pyrus x bretschneideri)
STRINGXP_009340785.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]