PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000468391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 348aa MW: 38707.1 Da PI: 6.3146 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.4 | 1.6e-29 | 136 | 197 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+YYrCt++ +C ++k+v+rs+edp+++eitY+g+H+++ MDP0000468391 136 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqSCXATKQVQRSDEDPTIFEITYRGKHTCT 197 59***************************98989**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.343 | 131 | 194 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.4E-29 | 132 | 198 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.68E-26 | 135 | 198 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-40 | 136 | 198 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.3E-27 | 137 | 196 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MENCNIHWEQ KSLVNELAQG RDLARQLQIH LNVPSSSYGT RELLVQKIIL SYEKALSMLN 60 SSSSASGGEQ QQPTGHVAIR MVESPPHSLN ESPRSEDSDR EFKDHDNKDS SRKRKNLPRW 120 TXQIRVTSGM GLEGPLDDGF SWRKYGQKDI LGAKYPRGYY RCTHRNVQSC XATKQVQRSD 180 EDPTIFEITY RGKHTCTQAS TGTSTPPSPS PLQPERTERQ NNLVDPQQNQ QQSQQHTLLN 240 LPEGLRVITE GLDTREELFP SFNSPSPLNN SYVGSFSSPF AGPTTSGTNY FSMSQRDFGV 300 DQNFQSGEII SAPTSATNSP SVGLDIPFGQ ADQLFPNFSF DGPGFFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-20 | 136 | 196 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008343785.2 | 0.0 | LOW QUALITY PROTEIN: probable WRKY transcription factor 53 | ||||
TrEMBL | A0A498KLF8 | 0.0 | A0A498KLF8_MALDO; Uncharacterized protein | ||||
STRING | XP_008354252.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 7e-55 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000468391 |