PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000467211
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 332aa    MW: 35860 Da    PI: 7.9897
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000467211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00091143165123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+++F++   L  H  +H
  MDP0000467211 143 YQCKTCDRCFPSFQALGGHRASH 165
                    9***********99999998887 PP
2zf-C2H212.40.00046234256123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C+ Cg  F++   L  H+r+H
  MDP0000467211 234 HECSVCGAEFTSGQALGGHMRRH 256
                    78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-8142165No hitNo description
SMARTSM003550.077143165IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182143170IPR007087Zinc finger, C2H2
PfamPF139124.6E-10143167IPR007087Zinc finger, C2H2
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
SuperFamilySSF576671.49E-8229256No hitNo description
Gene3DG3DSA:3.30.160.607.6E-4232256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-12233257IPR007087Zinc finger, C2H2
SMARTSM003550.012234256IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743234256IPR007087Zinc finger, C2H2
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MMMMMEAADH QDQDEAALGS KDQAQMMIIK GKRTKRQRLA SPLSXIATTA SSSSSAGHDH  60
DHLQHQGLVG PRPRDSTDVV GPTASPATSA DQFTEISTEE KEDMANCLIL LAQGNSIPKP  120
QNRNLVTNNK AASAAASAGL YLYQCKTCDR CFPSFQALGG HRASHKKPGK QININSTTQE  180
NKKALLFVEE AEEFDRFNNT STMLSLQISN TAFRALSSAT SPCYNNNNKA NKVHECSVCG  240
AEFTSGQALG GHMRRHRTFI NTAATTTAVA AMSSPPQSQS GSKRPRNVLQ LDLNLPAPEE  300
ECLHETSKFP FGPKMEQVIV FSASPLVGCH Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349742.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A498K4J50.0A0A498K4J5_MALDO; Uncharacterized protein
STRINGXP_009349742.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-51C2H2 family protein