PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000464809
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 952aa    MW: 105549 Da    PI: 6.4298
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000464809genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.51.3e-1075759511374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs....elykal.ppsetsekn...sseelaalklfsevs 88 
                    lv++L++cAeav+ +d++ a+alL +l+ +a   g+++qR+ ++f+++La rla  ++    ++ +   ++++ s ++   s+e+  al+l +e++
  MDP0000464809 575 LVQQLIACAEAVACRDKAHASALLFELRANAQAFGTSFQRVSSCFVQGLAXRLALVQPlgagGVIDPNvKSKPFSAEKgpfSAEKDEALHLVYEIC 670
                    689**************************************************984442222333333255666655599999999999******* PP

           GRAS  89 PilkfshltaNqaIleavegeervHiiDfdi....sqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                    P ++f+h++aN  Ilea+eg + vH+iD+++    ++G QW  L++ La+Rp ++ + lRiTgvgs    s+e+l+++g+ L+  A++++++ +f+
  MDP0000464809 671 PQIQFGHFVANASILEAFEGGSSVHVIDLGMtlglQHGYQWRDLIDRLANRPgQPLHXLRITGVGS----SSERLQAIGDDLKLHAQSMKINXDFS 762
                    ****************************976222268889************445569********....9************************* PP

           GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      v+++le+l+++++++  gE l++n++lqlh l++es  + +   + L+++ +lsPk++v+veq+++hn++ Fl rf+eal+ ysa+fdsl+a l
  MDP0000464809 763 E-VESNLENLKPQDFHLVDGEILIINSILQLHCLVKESRGTLN---SALQTLHELSPKLMVLVEQDTSHNGPFFLGRFMEALHNYSAIFDSLDAML 854
                    *.79*******************************99888777...8************************************************* PP

           GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                    p+ +  r+k+E++++g+ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+pl+  +++qa   l++ + +gy+v e++g+lvlgWk++p++++S
  MDP0000464809 855 PKYDTRRVKMEQFYFGEEIKNIVSCEGPARVERHERVDQWRRRMRRAGFQPAPLR--TMAQAVKWLETNACEGYTVVEDKGCLVLGWKSKPIIATS 948
                    ******************************************************7..57899999***99************************** PP

           GRAS 372 aWr 374
                    +W+
  MDP0000464809 949 CWK 951
                    **8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.18203.0E-862978IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534743.82E-48103196IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18203.0E-86121396IPR029058Alpha/Beta hydrolase fold
PfamPF078592.6E-65132372IPR013094Alpha/beta hydrolase fold-3
SuperFamilySSF534743.82E-48224381IPR029058Alpha/Beta hydrolase fold
PROSITE profilePS5098554.735549933IPR005202Transcription factor GRAS
PfamPF035144.5E-105575951IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    Send to blast
MPPLSLKLHS LFFKYHLRHQ LHNLTQSAQL QNTDPKFGIT SRPEEPVVPA NPTFQNGVAT  60
KNIHIDPNSS LSLRIFLPDT VLPLKAPNPT SRVGALLSPS PXCSNSDDGV VYRGYSPDQL  120
VGRRHRKVPI FLQFHGGGFV SGSNDTSWND AFCRRMAKLC DAIVVAVGYR LAPESPYPAA  180
FEDGVTVLKW VAKQANLALV QKGRSRIFDS FGSSMVEPWL AAHGDPSRCV LLGVSCGANL  240
ADYVARKAVE AGDLLDPIKV VAQVLMYPFF IGSTPTRSEI KLANSYLFDK ATCMLAWKLF  300
QTEEEFDLDH PAGNPLMPAG RGPPLKTMPP TLTVVAQHDW MRDRGIAYSE ELRKANVDAP  360
LLDYKDTVHE FATLDVLLET PQAKACAEDI TIWYKKEAST YTSHISHIVY ISPQGDSIGQ  420
ASNTLESYTM ASDLYVQPEF CGEITSNEVI GFDLNLSSMS CLPHPSLSAL EDDSANWVSP  480
FVDKTRNHKR LKQEHDANYG FKVGTNYSSF YTGSDSNMCT SGFTSLPTIQ FRDHISAHKR  540
RYLAAEAMEE AFATLMRDKE DESEEGGGSE DEIKLVQQLI ACAEAVACRD KAHASALLFE  600
LRANAQAFGT SFQRVSSCFV QGLAXRLALV QPLGAGGVID PNVKSKPFSA EKGPFSAEKD  660
EALHLVYEIC PQIQFGHFVA NASILEAFEG GSSVHVIDLG MTLGLQHGYQ WRDLIDRLAN  720
RPGQPLHXLR ITGVGSSSER LQAIGDDLKL HAQSMKINXD FSEVESNLEN LKPQDFHLVD  780
GEILIINSIL QLHCLVKESR GTLNSALQTL HELSPKLMVL VEQDTSHNGP FFLGRFMEAL  840
HNYSAIFDSL DAMLPKYDTR RVKMEQFYFG EEIKNIVSCE GPARVERHER VDQWRRRMRR  900
AGFQPAPLRT MAQAVKWLET NACEGYTVVE DKGCLVLGWK SKPIIATSCW K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-5558295026378Protein SCARECROW
5b3h_A8e-5558295025377Protein SCARECROW
5b3h_D8e-5558295025377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2596620.0AB259662.1 Malus x domestica mRNA for hypothetical protein, complete cds, clone: 18B-RT7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390112.20.0DELLA protein RGL1-like
TrEMBLA0A498ICF30.0A0A498ICF3_MALDO; Uncharacterized protein
STRINGXP_008390112.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-72RGA-like 1