PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000464809 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 952aa MW: 105549 Da PI: 6.4298 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 351.5 | 1.3e-107 | 575 | 951 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs....elykal.ppsetsekn...sseelaalklfsevs 88 lv++L++cAeav+ +d++ a+alL +l+ +a g+++qR+ ++f+++La rla ++ ++ + ++++ s ++ s+e+ al+l +e++ MDP0000464809 575 LVQQLIACAEAVACRDKAHASALLFELRANAQAFGTSFQRVSSCFVQGLAXRLALVQPlgagGVIDPNvKSKPFSAEKgpfSAEKDEALHLVYEIC 670 689**************************************************984442222333333255666655599999999999******* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdi....sqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 P ++f+h++aN Ilea+eg + vH+iD+++ ++G QW L++ La+Rp ++ + lRiTgvgs s+e+l+++g+ L+ A++++++ +f+ MDP0000464809 671 PQIQFGHFVANASILEAFEGGSSVHVIDLGMtlglQHGYQWRDLIDRLANRPgQPLHXLRITGVGS----SSERLQAIGDDLKLHAQSMKINXDFS 762 ****************************976222268889************445569********....9************************* PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 v+++le+l+++++++ gE l++n++lqlh l++es + + + L+++ +lsPk++v+veq+++hn++ Fl rf+eal+ ysa+fdsl+a l MDP0000464809 763 E-VESNLENLKPQDFHLVDGEILIINSILQLHCLVKESRGTLN---SALQTLHELSPKLMVLVEQDTSHNGPFFLGRFMEALHNYSAIFDSLDAML 854 *.79*******************************99888777...8************************************************* PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 p+ + r+k+E++++g+ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+pl+ +++qa l++ + +gy+v e++g+lvlgWk++p++++S MDP0000464809 855 PKYDTRRVKMEQFYFGEEIKNIVSCEGPARVERHERVDQWRRRMRRAGFQPAPLR--TMAQAVKWLETNACEGYTVVEDKGCLVLGWKSKPIIATS 948 ******************************************************7..57899999***99************************** PP GRAS 372 aWr 374 +W+ MDP0000464809 949 CWK 951 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1820 | 3.0E-86 | 29 | 78 | IPR029058 | Alpha/Beta hydrolase fold |
SuperFamily | SSF53474 | 3.82E-48 | 103 | 196 | IPR029058 | Alpha/Beta hydrolase fold |
Gene3D | G3DSA:3.40.50.1820 | 3.0E-86 | 121 | 396 | IPR029058 | Alpha/Beta hydrolase fold |
Pfam | PF07859 | 2.6E-65 | 132 | 372 | IPR013094 | Alpha/beta hydrolase fold-3 |
SuperFamily | SSF53474 | 3.82E-48 | 224 | 381 | IPR029058 | Alpha/Beta hydrolase fold |
PROSITE profile | PS50985 | 54.735 | 549 | 933 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-105 | 575 | 951 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016787 | Molecular Function | hydrolase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 952 aa Download sequence Send to blast |
MPPLSLKLHS LFFKYHLRHQ LHNLTQSAQL QNTDPKFGIT SRPEEPVVPA NPTFQNGVAT 60 KNIHIDPNSS LSLRIFLPDT VLPLKAPNPT SRVGALLSPS PXCSNSDDGV VYRGYSPDQL 120 VGRRHRKVPI FLQFHGGGFV SGSNDTSWND AFCRRMAKLC DAIVVAVGYR LAPESPYPAA 180 FEDGVTVLKW VAKQANLALV QKGRSRIFDS FGSSMVEPWL AAHGDPSRCV LLGVSCGANL 240 ADYVARKAVE AGDLLDPIKV VAQVLMYPFF IGSTPTRSEI KLANSYLFDK ATCMLAWKLF 300 QTEEEFDLDH PAGNPLMPAG RGPPLKTMPP TLTVVAQHDW MRDRGIAYSE ELRKANVDAP 360 LLDYKDTVHE FATLDVLLET PQAKACAEDI TIWYKKEAST YTSHISHIVY ISPQGDSIGQ 420 ASNTLESYTM ASDLYVQPEF CGEITSNEVI GFDLNLSSMS CLPHPSLSAL EDDSANWVSP 480 FVDKTRNHKR LKQEHDANYG FKVGTNYSSF YTGSDSNMCT SGFTSLPTIQ FRDHISAHKR 540 RYLAAEAMEE AFATLMRDKE DESEEGGGSE DEIKLVQQLI ACAEAVACRD KAHASALLFE 600 LRANAQAFGT SFQRVSSCFV QGLAXRLALV QPLGAGGVID PNVKSKPFSA EKGPFSAEKD 660 EALHLVYEIC PQIQFGHFVA NASILEAFEG GSSVHVIDLG MTLGLQHGYQ WRDLIDRLAN 720 RPGQPLHXLR ITGVGSSSER LQAIGDDLKL HAQSMKINXD FSEVESNLEN LKPQDFHLVD 780 GEILIINSIL QLHCLVKESR GTLNSALQTL HELSPKLMVL VEQDTSHNGP FFLGRFMEAL 840 HNYSAIFDSL DAMLPKYDTR RVKMEQFYFG EEIKNIVSCE GPARVERHER VDQWRRRMRR 900 AGFQPAPLRT MAQAVKWLET NACEGYTVVE DKGCLVLGWK SKPIIATSCW K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-55 | 582 | 950 | 26 | 378 | Protein SCARECROW |
5b3h_A | 8e-55 | 582 | 950 | 25 | 377 | Protein SCARECROW |
5b3h_D | 8e-55 | 582 | 950 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB259662 | 0.0 | AB259662.1 Malus x domestica mRNA for hypothetical protein, complete cds, clone: 18B-RT7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008390112.2 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | A0A498ICF3 | 0.0 | A0A498ICF3_MALDO; Uncharacterized protein | ||||
STRING | XP_008390112.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8730 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 1e-72 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000464809 |