PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000462091
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 274aa    MW: 29583.9 Da    PI: 7.2459
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000462091genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.33.2e-3265121360
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     vrY+eClkNhA+ +Ggha+DGCgEf+++ g+egt +alkCaAC+CHRnFHR+e+e e
  MDP0000462091  65 MVRYRECLKNHAIGIGGHALDGCGEFLAA-GDEGTLDALKCAACNCHRNFHRKEPEAE 121
                    79**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.1E-2966118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2367120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-2867117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.04968117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.59E-21194269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-32197269IPR009057Homeodomain-like
TIGRFAMsTIGR015655.0E-27208264IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEFDEHEEQD EEMELQAAPP GYASVAASSR PKLGPTGEGA ASIVRKRGTA ATPNSTTTTT  60
AVSTMVRYRE CLKNHAIGIG GHALDGCGEF LAAGDEGTLD ALKCAACNCH RNFHRKEPEA  120
ELIHHQQGAG GSHHLHHHHH PHQFSSGYYR PPPPPSGYLI TSPHARPTLA LPAASGGGGG  180
SHSREEEEDV SNPSSSGGGG GGGFGMSKKR HRTKFTQEQK EKMLEFAEKV GWRIQKHEEA  240
AIEEFCEETG VKRHVFKVWM HNNKHTLGKK LVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-262072661675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338913.10.0zinc-finger homeodomain protein 2-like isoform X2
SwissprotA2Z2591e-68ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A498JA661e-135A0A498JA66_MALDO; Uncharacterized protein
STRINGXP_008338912.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-50homeobox protein 22