PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000460139
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 345aa    MW: 37657.6 Da    PI: 6.8561
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000460139genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.2e-29168228259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dg++WrKYGqKe+ +s+fpr+YYrCt++   +Cp+kk+v+r ++dp ++e++Y+geH+++
  MDP0000460139 168 EDGFTWRKYGQKEIMNSKFPRGYYRCTHQklyNCPAKKQVQRLDNDPLTFEVMYRGEHTCH 228
                    7****************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-27164229IPR003657WRKY domain
SuperFamilySSF1182906.54E-26165229IPR003657WRKY domain
SMARTSM007741.3E-37167229IPR003657WRKY domain
PfamPF031069.3E-27168228IPR003657WRKY domain
PROSITE profilePS5081120.094168230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEEIISLXLH GCMLAGKLKE TLPNLATQPD LLSNSLEEIT KIFGSAKERV LHSQGSSTTS  60
YLHNLLTLEH QQIGTSVEQW LRSNTQAMDI IQTQLAADRN EAKVSGGVDV RVSEAAVGGF  120
QAAAAVSASN VNIASSSTQR PRRRKDQGVI NKITVPAPRI GNTEIPPEDG FTWRKYGQKE  180
IMNSKFPRGY YRCTHQKLYN CPAKKQVQRL DNDPLTFEVM YRGEHTCHMS ATAPSTLPPP  240
TADHXIPQDH LSATTEPPTS LWLSMDFNPI RQGGSSSGMI GGRGSGRGSG DDVGTSTGTR  300
YGKEVDFPVM DLADTMFNSG SSSSSMDFIF NSAEHRWESD DKKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-21168227968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140144PRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388892.20.0WRKY transcription factor 55-like
TrEMBLA0A498KKI40.0A0A498KKI4_MALDO; Uncharacterized protein
STRINGXP_008388892.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-53WRKY DNA-binding protein 55