PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000457509 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 183aa MW: 20062.2 Da PI: 10.6569 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.3 | 1.4e-21 | 46 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrd ++ ++r +lg+f+taeeAa+a+++a+++l+g MDP0000457509 46 PHFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDEAALSLRG 96 689*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.68E-30 | 46 | 103 | No hit | No description |
Pfam | PF00847 | 1.3E-14 | 46 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.708 | 47 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-34 | 47 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 47 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-22 | 47 | 104 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-10 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSTVDALHLR DTALSLAVEP PSPPPGIPRP QPKHGAPAKA GAGKDPHFRG VRKRPWGRFA 60 AEIRDPWKKT RKWLGTFDTA EEAARAYDEA ALSLRGPKAK TNFGNLALVP PHSLLLGGGS 120 EMFWPPPPMY FMSGAPAVAP IRSEYTGYKL EKVDAVRGQE EKKMRKNKKP FLFDLNLPAP 180 LF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 48 | 119 | 15 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008382937.1 | 1e-129 | ethylene-responsive transcription factor 8-like | ||||
TrEMBL | A0A498IYX0 | 1e-128 | A0A498IYX0_MALDO; Uncharacterized protein | ||||
STRING | XP_008382937.1 | 1e-128 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 5e-21 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000457509 |