PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000456290
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 395aa    MW: 43879.7 Da    PI: 4.3504
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000456290genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind90.91.5e-28319394286
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                    Fl+k++++++d+e+++++sws+  +sf+v+d  ef+k +Lpk+Fkh+nf+SF+RQLn+YgF+kv++++         weF+++ F
  MDP0000456290 319 FLNKTFQMVDDPETNSIVSWSDARQSFIVWDLYEFSKPLLPKHFKHNNFSSFIRQLNTYGFRKVDQDR---------WEFANERF 394
                    9****************************************************************998.........88888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474739.34E-29101237IPR011992EF-hand domain pair
PROSITE profilePS5022216.661112147IPR002048EF-hand domain
Gene3DG3DSA:1.10.238.103.9E-17112165IPR011992EF-hand domain pair
CDDcd000512.23E-15116173No hitNo description
PfamPF000365.9E-9116144IPR002048EF-hand domain
SMARTSM000541.1E-8116144IPR002048EF-hand domain
PROSITE patternPS000180125137IPR018247EF-Hand 1, calcium-binding site
SMARTSM000546.8152177IPR002048EF-hand domain
PROSITE profilePS502228.962155180IPR002048EF-hand domain
PfamPF132020.017157173IPR002048EF-hand domain
PROSITE patternPS000180158170IPR018247EF-Hand 1, calcium-binding site
Gene3DG3DSA:1.10.238.104.0E-14166237IPR011992EF-hand domain pair
PROSITE profilePS5022210.301182217IPR002048EF-hand domain
SMARTSM000541.6186214IPR002048EF-hand domain
CDDcd000512.87E-9188240No hitNo description
Gene3DG3DSA:1.10.10.103.7E-32313394IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-38315394IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-26315394IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-24319394IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-19319342IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-19357369IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340358382IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-19370382IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDSXSLCSQR LLLSDRLLSL FSFSLPSSLT DDEDLKEAEV FWTTDFTEPA DDALNPLLIL  60
PDPLPCKDEV FNSVGIGSVP THPNSDKLLF AVTAHPAATS AHLRTPSFHS HAXIAELDQV  120
FKKFDVNGDG KISFFELRAI MSSLGQSSFD EELKQHVDSD GDGFINFKEF VELNTKGVDF  180
VEALENPKDA FSVYDIDRNV SISTEELYKV LRSLGDECLI DECRKMIGGV DSDGDGRNFD  240
RSSSSSSSTX PLNPTAELLK VKEETVDVXV VDNDLEGGDH CKIINXGGGG GDFGLLSSSS  300
SMELPKPIKG LHEAGPPLFL NKTFQMVDDP ETNSIVSWSD ARQSFIVWDL YEFSKPLLPK  360
HFKHNNFSSF IRQLNTYGFR KVDQDRWEFA NERF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-193003821092Heat shock factor protein 1
5d5v_B1e-193003821092Heat shock factor protein 1
5d5v_D1e-193003821092Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.19e-42heat shock transcription factor A2