PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000455180 | ||||||||
Common Name | WRKY12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 348aa MW: 38454.1 Da PI: 5.1455 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86.3 | 2.8e-27 | 125 | 186 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ g+++pr+YYrCt++ gC ++k+v++s+ dp++++ tY+g H+++ MDP0000455180 125 LDDGYSWRKYGQKNILGANHPRGYYRCTHRgtqGCVATKQVQKSDADPTTFVLTYRGVHTCN 186 59***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.6E-27 | 123 | 187 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.3E-38 | 125 | 187 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-24 | 125 | 187 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.917 | 125 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-25 | 126 | 185 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MEREQESLTS ELTQGKELAE QLMSHLHHSS SEEXRDFLIS KILFSYEKAL SLLTGSGDGS 60 DGESKHXTAR ETMLESPTSF GNSSPLSEIS DQDCKRKNVF KKTKTMPSWT EEVKVSSGTG 120 LDGGLDDGYS WRKYGQKNIL GANHPRGYYR CTHRGTQGCV ATKQVQKSDA DPTTFVLTYR 180 GVHTCNKASQ LARVKEGLKG NXNTTLEVKK AKQFXPEMSF SFGRAGLRVK TEHLDAREKD 240 IFSPFSFPST PIESEXVGEH IFCSTMMXNN LVDSYAPIFE SPPAXFESDY LAVSPCHMSS 300 FGLAHDVQTS ESDLTEIISA PTSVTNSPIG DFDFSIDDFE FPPDCLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-20 | 125 | 185 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.687 | 0.0 | bud| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX112908 | 0.0 | JX112908.1 Malus x domestica WRKY transcription factor 46 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280874.1 | 0.0 | probable WRKY transcription factor 46 | ||||
TrEMBL | D9ZJF1 | 0.0 | D9ZJF1_MALDO; WRKY domain class transcription factor | ||||
STRING | XP_008350310.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 9e-37 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000455180 |
Entrez Gene | 103413603 |