PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000453797 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 344aa MW: 38607.5 Da PI: 7.3424 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 149 | 198 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g MDP0000453797 149 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 198 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.04E-34 | 148 | 208 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 149 | 207 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 149 | 206 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-38 | 149 | 212 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-23 | 149 | 207 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-14 | 150 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 150 | 161 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 172 | 188 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence Send to blast |
MDSERLRVVE AMDFTLTLSQ SLQQQHNDIR SIRSLEGRSA HESTYALYEK CFFNIPFHFL 60 HYPPQXXQNF NLYPDFCSAP MISQAGAIGL NQLTPSQILQ IQSQMILQQH QQKQQISAFA 120 SSPAHTLKLL RPKAVPMKQA GTPSKPTKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD 180 TAEEAALAYD KAAFKLRGDF ARLNFPHLRH QGALVCGDFG HYKPLHSSVD AKLQAICQSL 240 GANSTKQGNT GEPCPVAETK PVVSAPLEAK MDDSFKSELK SESEAFSSSS YSPSRSDESS 300 SPESDITFLD FSDSQWDEAE NFGLEKYPSV EIDWSXXKAV VML* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 148 | 206 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-21 | 148 | 206 | 4 | 63 | ATERF1 |
3gcc_A | 3e-21 | 148 | 206 | 4 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.12817 | 0.0 | fruit| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GU732475 | 0.0 | GU732475.1 Malus x domestica AP2 domain class transcription factor (AP2D51) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017182498.2 | 0.0 | ethylene-responsive transcription factor ERF060 isoform X1 | ||||
Swissprot | Q8H1E4 | 2e-77 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A1P8VHU2 | 0.0 | A0A1P8VHU2_9ROSA; DREB6.4 (Fragment) | ||||
STRING | XP_008352604.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78080.1 | 5e-55 | related to AP2 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000453797 |
Publications ? help Back to Top | |||
---|---|---|---|
|