PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000453148 | ||||||||
Common Name | C2H2L20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 528aa MW: 58713.3 Da PI: 6.3984 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.9 | 9.5e-07 | 271 | 292 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H MDP0000453148 271 FCAICGKGFKRDANLRMHMRGH 292 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.46E-5 | 268 | 296 | No hit | No description |
PROSITE profile | PS50157 | 11.884 | 270 | 297 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 270 | 292 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.0012 | 271 | 292 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 271 | 321 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 272 | 292 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 53 | 319 | 352 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 357 | 379 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MDPKERQWDT WENPSTGNDV TNTISSDHPS FTNFNSQQHQ REWERPSVLD YEMRMEPSFL 60 KFHQPSDSQM SYTCNSKNDT KIPDQEGGKM HEVQQPNKIQ DWDARMTLNN LTFLEQKIHQ 120 LQDLVHVIVG RRGQVLGRPD ELVAQQQQLI TADLTSIIAQ LISTAGSLLP SVKHTLSTTL 180 PSTGQFGQLG GSFIPSAAGN DAGVKMQINS GSKLADQANQ TDLISNYGTE HIEEHETKDE 240 EDADEGENLP PGSYEILQLE KEEILAPHTH FCAICGKGFK RDANLRMHMR GHGDEYKTAA 300 ALAKPNKESS SEPTLIKRYS CPYAGCKRNK DHKKFQPLKT ILCVKNHYKR THCDKSYTCS 360 RCNTKKFSVI ADLKTHEKHC GIDKWLCSCG TTFSRKDKLF GHITLFQGHT PAIPLDETKG 420 TLGPADHGEG SEASNRVGSI SFSVSSTAPG GGGAAQSLMD VKESIDDPTS YFSPLNFETC 480 NFDGFQEFPR PPFEDTESSF SFLMPGSCNY THKTGGGESN FNNLHRQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.8050 | 0.0 | bud| cell culture| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots (e.g. root tips and lateral roots), leaves, flowers (e.g. stigma, sepal, anther, and filament), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315915.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A498K4R0 | 0.0 | A0A498K4R0_MALDO; Uncharacterized protein | ||||
STRING | XP_008381003.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5340 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 0.0 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000453148 |