PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000453000
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 1018aa    MW: 115145 Da    PI: 6.1142
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000453000genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2982.5e-914357902365
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL+ cA+avs++d++ +++lL++++++asp+gd  qRla++f+++L+ar+ ++ +++  ++ +s  ++++ ++ l+++ +   ++P+ +++ l 
  MDP0000453000 435 XNLLILCAQAVSTNDFRTTSELLKQVRQHASPNGDGSQRLAHFFANGLEARMGGTDTGTQ-KFYTSLXKRSSAVDXLKSYXVHLSACPFKRMCXLF 529
                    689***************************************************666655.566666667899*********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                     N++Il+ +e+++++Hi+Df+i +G+QWp L+q L++R +gpp+lRiTg++ p+ g     ++  +rL    e +     +n+++++++e+++le+
  MDP0000453000 530 KNKMILKMAEKATTLHIVDFGILYGFQWPXLIQHLSKRXGGPPKLRITGIEVPNLG--FVRQSGLKRLDVAWEDI-----YNAIASQNWESIQLED 618
                    ****************************************************7733..33333334444333333.....9999999********* PP

           GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                    L+++++E+laVn++l+ ++llde+v+++ +rd+vL+l+++++P+++v++  + ++n++ F++rf eal +ys+l+d+++ ++pr++eer   E e+
  MDP0000453000 619 LKTERNEVLAVNCMLRFKNLLDETVEVNCPRDAVLNLIRKMKPDIFVHSIINGSYNAPFFVTRFREALFHYSSLYDAFDINIPRDNEERLRFESEF 714
                    ************************************************************************************************ PP

           GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                     gre++nv+aceg e +er et+++W+ r ++aG++p++l+++ +k  k  ++  + + + v+++s+++++gWk+r
  MDP0000453000 715 YGREAMNVIACEGVEXVERPETYKQWQVRCMRAGLQPLQLDQDLVKILKDKVKAWYHKDFVVDQDSDWMLQGWKGR 790
                    ********************************************************888***************98 PP
2GRAS189.62.1e-587911003160373
           GRAS  160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 
                      tg+rLak++e  +vpfe+n  +ak++e++++eeL+vk++E+laVn+ ++ ++llde+v ++s+rd vL+ ++s++P++++++  + ++n++ +
  MDP0000453000  791 ITGHRLAKYCEXYNVPFEYNG-IAKKWEAIQYEELNVKRDEVLAVNCLFRFKNLLDETVVVNSPRDXVLNXIRSMNPDIFIHSVINGSYNAPFY 883 
                     69*******************.7*********************************************************************** PP

           GRAS  254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 
                     ++ f eal+++salfd+++++l+re+  r + E+e+lgr +vn +aceg+er+ r et+++W+ r ++aGFk++pl+ + +++ +  ++  + +
  MDP0000453000  884 VTPFREALSHFSALFDMFDTNLSREDPMRLMFEEEFLGRXVVNTIACEGSERVVRPETYKQWQVRNMRAGFKQLPLNRELMNKLRXNVKLGYHR 977 
                     ********************************************************************************************99 PP

           GRAS  348 gyrveeesgslvlgWkdrpLvsvSaW 373 
                      + v+e+ +++++gWk+r ++  S W
  MDP0000453000  978 DFVVDEDGNWMLQGWKGRIIYXSSRW 1003
                     9************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.055408779IPR005202Transcription factor GRAS
PfamPF035148.5E-89435790IPR005202Transcription factor GRAS
PfamPF035147.4E-567911003IPR005202Transcription factor GRAS
PROSITE profilePS5098527.753792984IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1018 aa     Download sequence    Send to blast
MDHPTVNGSP DYLNGFSIDD LAFSPXSTQF SNLTNEYQFN QFSPDLNFVD NHFSLPPDFE  60
QGNIVPKVSL TTSGESSVPS NSLNPPDGXS LSLPTXVSVG GVDSSSDDSD FSEAVFKYVN  120
QILLEENIEK KPCMFFDPLG LRVTEKSFYD VLGQRYPFSP NQQPLHINPN VESPGGNNSG  180
SCSDCSGSNN SPSPGTSNSN DPQRVGDSGD PKSSFPQTTL PXDNPFQFNS HSSSQLSVPL  240
ENRMTSVGDR RHVGGGQRLD DMLQGSSVEE FVAQNIYTDS DSILQFQRGL EEASKFLPKS  300
TQLLVDLESN TVSPEVKAXV PMVTVKKEKS ERKNSXNGSK GRKNREREDV DLEEGRSSKQ  360
SAVYIEKTEE SELSEMFDKV LLSTGGNNES QCGNVAFKNE ASKTLQPGQP QGSNGNGGKA  420
RGKKQGKKKE TVDLXNLLIL CAQAVSTNDF RTTSELLKQV RQHASPNGDG SQRLAHFFAN  480
GLEARMGGTD TGTQKFYTSL XKRSSAVDXL KSYXVHLSAC PFKRMCXLFK NKMILKMAEK  540
ATTLHIVDFG ILYGFQWPXL IQHLSKRXGG PPKLRITGIE VPNLGFVRQS GLKRLDVAWE  600
DIYNAIASQN WESIQLEDLK TERNEVLAVN CMLRFKNLLD ETVEVNCPRD AVLNLIRKMK  660
PDIFVHSIIN GSYNAPFFVT RFREALFHYS SLYDAFDINI PRDNEERLRF ESEFYGREAM  720
NVIACEGVEX VERPETYKQW QVRCMRAGLQ PLQLDQDLVK ILKDKVKAWY HKDFVVDQDS  780
DWMLQGWKGR ITGHRLAKYC EXYNVPFEYN GIAKKWEAIQ YEELNVKRDE VLAVNCLFRF  840
KNLLDETVVV NSPRDXVLNX IRSMNPDIFI HSVINGSYNA PFYVTPFREA LSHFSALFDM  900
FDTNLSREDP MRLMFEEEFL GRXVVNTIAC EGSERVVRPE TYKQWQVRNM RAGFKQLPLN  960
RELMNKLRXN VKLGYHRDFV VDEDGNWMLQ GWKGRIIYXS SRWVPSRSCN ACLLEQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-374387548328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.161650.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028945142.10.0uncharacterized protein LOC103422728
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A498IRE00.0A0A498IRE0_MALDO; Uncharacterized protein
STRINGXP_008385103.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-177SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]