PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000452559
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 413aa    MW: 44779.9 Da    PI: 7.9763
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000452559genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.2e-29147206159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dg++WrKYGqK+ k +++pr+YYrCt a  Cpv+k+v+r+ ed +++++tYeg+Hnh+
  MDP0000452559 147 MNDGCQWRKYGQKTAKXNPCPRAYYRCTVApACPVRKQVQRCYEDMSILITTYEGTHNHP 206
                    58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-31132208IPR003657WRKY domain
SuperFamilySSF1182901.7E-26139208IPR003657WRKY domain
PROSITE profilePS5081127.244142208IPR003657WRKY domain
SMARTSM007742.3E-34147207IPR003657WRKY domain
PfamPF031061.1E-25148206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MKKDYHSLQL RFFEILKQQA SKKAVNVAGH RIIEEPEELL SLCLGRSPRE PKSDHETTAS  60
SNFTKLAQVD DGEENLMANL TLGLGSDETS LEEPNKNHAE AGGGEASSPP SSKTRKTMRN  120
EDGEPPPQVN AKRARVSVRT RCDAPTMNDG CQWRKYGQKT AKXNPCPRAY YRCTVAPACP  180
VRKQVQRCYE DMSILITTYE GTHNHPLPFT ATSMASTTSA AASMLLSGSS TSHPXFGSTA  240
TLINGSEXGA FDNSRTQLYM PKSSHPLLPT ITLDLTASTS SSSTFPSSLS FCSPSDSNSL  300
PISWGNGYLK YGLPLSDKTQ VGSYNLGKAS QEYFHQTYAE KIHQASSQVS LTESLTNAIT  360
SDPNFKSVIA VALSSMVGGX GGATHRNQGE GCERMGKQLK WDEATHQFTS QK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20134208174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963638.10.0probable WRKY transcription factor 72
SwissprotQ9LXG88e-83WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A498J4C30.0A0A498J4C3_MALDO; Uncharacterized protein
STRINGXP_008348221.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-64WRKY DNA-binding protein 72