PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000451365
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 214aa    MW: 23682.3 Da    PI: 5.0028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000451365genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.39e-144695356
            AP2  3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                    kGVr+  + g+Wv+e+r p     k+ r++lg+f ++++Aa+a++ a+++l+ge
  MDP0000451365 46 XKGVRQ--RCGKWVCELRQP---DhKKSRIWLGTFTSPDMAARAYDVAALALKGE 95
                   69**86..47******9998...5567*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-94495IPR001471AP2/ERF domain
PROSITE profilePS5103218.67645102IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-1746103IPR016177DNA-binding domain
CDDcd000184.68E-2547103No hitNo description
Gene3DG3DSA:3.30.730.103.5E-2547104IPR001471AP2/ERF domain
SMARTSM003803.2E-2647108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MADLTDDRSS STSIISVPTL MQTSMGVVKK RKAGRKKFTE TRHPVXKGVR QRCGKWVCEL  60
RQPDHKKSRI WLGTFTSPDM AARAYDVAAL ALKGESASLN FPNEASALPR FESNAYTVKX  120
IQCAALEAAE AFLEVKVKAS SSSSLKLEKV EEEEMGKVVY LDEEELFNMP GLIDSMAEGL  180
ILTPPSLQKG FNWNEYDDDD WGNNTGDISL WSD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028948628.11e-156dehydration-responsive element-binding protein 1D-like
SwissprotQ9FJ935e-49DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A498I0071e-154A0A498I007_MALDO; Uncharacterized protein
STRINGXP_008391758.11e-141(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.15e-29C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]