PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000443612 | ||||||||
Common Name | C2H2L21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 256aa MW: 28187.1 Da PI: 7.3026 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 97 | 119 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H MDP0000443612 97 FSCNYCKRKFYSSQALGGHQNAH 119 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.8E-6 | 95 | 125 | No hit | No description |
PROSITE profile | PS50157 | 11.406 | 97 | 124 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MLTQNLNLEF ENDSEVTSQV TYSSIPLQEE SPDPSKDSTT TSSCLTNQKH QQQDPRPVSL 60 HLTLQFSSGD TELKGTGETS SEAAAPPTSE GTIPRVFSCN YCKRKFYSSQ ALGGHQNAHK 120 RERTMAKRAM RMGMFPDRYT SLASLPLHRS APSAFRSLGI QAHSAVHQNT MITSDHQRFL 180 VPDTRGVARF RQGYFGVPMF MDEDDVGMFW PGSFRQVGEX AGGHQLAQNP NMNTGTSMEP 240 RNSTSSSSPD LSLKL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12641 | 0.0 | bud| cell culture| fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008350832.2 | 0.0 | zinc finger protein 4-like isoform X1 | ||||
Refseq | XP_008350833.2 | 0.0 | zinc finger protein 4-like isoform X1 | ||||
Refseq | XP_008350834.2 | 0.0 | zinc finger protein 4-like isoform X1 | ||||
Refseq | XP_008350835.2 | 0.0 | zinc finger protein 4-like isoform X1 | ||||
Swissprot | Q39263 | 8e-45 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | D9ZIT1 | 0.0 | D9ZIT1_MALDO; C2H2L domain class transcription factor | ||||
STRING | XP_008350832.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 1e-44 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000443612 |
Publications ? help Back to Top | |||
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