PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000443053
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 459aa    MW: 51687.7 Da    PI: 6.1056
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000443053genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.95.8e-133444551374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL++cA +v+sg+ e+ +  L ++s+laspdgd+mqR+aayfteALa r+++  ++l kal +++ s  ++see+ +++lf++++P+lk++++
  MDP0000443053  44 LIQLLYACASHVTSGSIEKSNFWLDQISQLASPDGDSMQRIAAYFTEALADRMLKGXPGLHKALXSTKIS--SVSEEIXVQRLFFDLCPFLKVAYV 137
                    689*************************************************************988887..5*********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    ++NqaI+ea+ege++vHiiD+   +++QW++L+q+L++Rpegpp+lRiTg+++    +ke l ++  +L++ A +l++pf+fn+ ++++le+l++e
  MDP0000443053 138 VTNQAIVEAMEGEKMVHIIDLHSCEPAQWINLIQTLNARPEGPPHLRITGINE----QKEVLDQMFLQLTEEAGNLNIPFQFNA-IVSKLENLDIE 228
                    *****************************************************....9**************************.7999******* PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrll...............................................desvsleserdevLklvkslsPkvvvv 241
                    +Lrvk+gEala+++vlqlh++l                                                +++s +s++ ++L  +++lsPk++v+
  MDP0000443053 229 SLRVKTGEALAICSVLQLHSFLasdddhrrksplasknlqkvlhmnkltlgewlekdpisaynlspdtaWSPLSGASPTGSFLTSLWGLSPKLMVI 324
                    ******************************************************************999889999999****************** PP

           GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                    +eqea+hn++++++r++eal++y alfd+le++++r+  er+kvE++l+g+ei+n++aceg+errerhe+lekW  rle aGF++vpls++ + qa
  MDP0000443053 325 TEQEANHNGHTLMDRIMEALYFYGALFDCLESTVSRAPMERQKVEKMLFGEEIKNIIACEGTERRERHEKLEKWVLRLELAGFGKVPLSYNGMLQA 420
                    ************************************************************************************************ PP

           GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    + llr ++  gy+++ee+g+++++W+drpL+++S Wr
  MDP0000443053 421 RGLLRGYE--GYKIKEENGCVFICWHDRPLFTISGWR 455
                    *******9..**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.3718437IPR005202Transcription factor GRAS
PfamPF035142.0E-13044455IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAQEDGSPVT SSPLQFFPWL SPGMGSPYSP WLRELKSEER GLCLIQLLYA CASHVTSGSI  60
EKSNFWLDQI SQLASPDGDS MQRIAAYFTE ALADRMLKGX PGLHKALXST KISSVSEEIX  120
VQRLFFDLCP FLKVAYVVTN QAIVEAMEGE KMVHIIDLHS CEPAQWINLI QTLNARPEGP  180
PHLRITGINE QKEVLDQMFL QLTEEAGNLN IPFQFNAIVS KLENLDIESL RVKTGEALAI  240
CSVLQLHSFL ASDDDHRRKS PLASKNLQKV LHMNKLTLGE WLEKDPISAY NLSPDTAWSP  300
LSGASPTGSF LTSLWGLSPK LMVITEQEAN HNGHTLMDRI MEALYFYGAL FDCLESTVSR  360
APMERQKVEK MLFGEEIKNI IACEGTERRE RHEKLEKWVL RLELAGFGKV PLSYNGMLQA  420
RGLLRGYEGY KIKEENGCVF ICWHDRPLFT ISGWRSRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-63274572381Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358693.20.0scarecrow-like protein 3
RefseqXP_017184190.20.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A498JE070.0A0A498JE07_MALDO; Uncharacterized protein
STRINGXP_008358693.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]