PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000442611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TCP | ||||||||
Protein Properties | Length: 350aa MW: 38232.2 Da PI: 7.1786 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.4 | 5.3e-34 | 22 | 138 | 2 | 113 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................ssssas 71 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++ ++++ + MDP0000442611 22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwhpittsnhaaxaddpfrssnpnpNQNP-N 116 79**************************************************************888877665555555554443322211111.1 PP TCP 72 ec.eaesssssasnsssgkaaksaakskksqksaasalnlake 113 e+ ++q+++++ n+ e MDP0000442611 117 EMvI---------------------AAAEQQSESSAGYNFXFE 138 1111.....................111111111111222221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-30 | 22 | 129 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.754 | 24 | 82 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGMKGCGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKSSID KLAELPPWHP ITTSNHAAXA DDPFRSSNPN PNQNPNEMVI 120 AAAEQQSESS AGYNFXFELH RQRQSDNESN FNIPPSLDSD NIADTMKSFF PTNTSSNAAA 180 ASSVVDFQSY APDPHLISTT TQDLGLSLHS FQDQSLNIHH NHTHTQQSSQ TLFAAAMGIG 240 LDSSSYQRMV AWSNENRGLD GGFVFNSHSH SYAQPQPHHH GGTLQSSFTP SVSARAWQQQ 300 QQHSSIFGTR FGASNGSSPV FCIQGEEAEN GVVSDRTAST SSPNSTRQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-23 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 7e-23 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.14482 | 0.0 | bud| fruit| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM501064 | 0.0 | KM501064.1 Malus domestica TCP domain-containing protein 4 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008381571.2 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 9e-67 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A498JAJ5 | 0.0 | A0A498JAJ5_MALDO; Uncharacterized protein | ||||
STRING | XP_008381571.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 4e-65 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000442611 |