PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000431628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 532aa MW: 58897.7 Da PI: 6.0934 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 361.2 | 1.5e-110 | 160 | 530 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 lv+lL++cAeav+ +d++ a+alL++l+ +a g+++qR+a++f+++La+rla ++ + + s+ s+k+ +++ al+l +e++P ++f+ MDP0000431628 160 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLANRLALVQPLGAVGFIGSAMSTKDfaLDKKEEALRLVYEICPHIQFG 255 689**************************************************9955543333433444434445999999*************** PP GRAS 95 hltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 h++aN+ Ilea+ege+ vH++D++++ +G QW L+++La+R+++pp +lRiTgvg ++l+ +ge L+ +A++lg+++ef+v v ++ MDP0000431628 256 HFVANSSILEAFEGESFVHVVDLGMTlglpHGDQWXGLIESLATRTGQPPtRLRITGVGL----YGDRLQIIGEELEAYADSLGINLEFSV-VXSN 346 **********************99873333667*************88877*********....9*************************9.7*** PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 le+l++ ++++ gE+l+Vn++lqlh +++es + +vL++v +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ + MDP0000431628 347 LENLRPXDIKMYDGEVLVVNSILQLHCVVKESRGALN---SVLQMVHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTR 439 *****************************88877777...8******************************************************* PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+k+E++++++ei+n+++ceg++ + +++ +Wr+r+++aGF+++p++ + +qak l k+k +gy++ ee+g+lvlgWk++p+v++S+W+ MDP0000431628 440 RAKMEQFYFAEEIKNIISCEGRQ-GGEAREVDQWRRRMSRAGFQAAPIK--MLAQAKQWLGKIKvCEGYTILEEKGCLVLGWKSKPIVAASCWK 530 **********************9.555556*****************97..678***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.737 | 134 | 511 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.1E-108 | 160 | 530 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MALSRNFLPE EYMINHERTN KMSVLDLITH SAASAMPCYP YPHTPLLEEG GTASTPPXXD 60 ESGNHKRLKR TTSISDSMSS HNSLYSGGGS GDSCITDISL SRRSSTNSLN TLPRLHFRDH 120 IWTYTQRYLA AEAVEEAAXX MSNAEGNEEE EDXTXXGMRL VQLLIACAEA VACRDKSHAS 180 ALLSELRANA LVFGSSFQRV ASCFVQGLAN RLALVQPLGA VGFIGSAMST KDFALDKKEE 240 ALRLVYEICP HIQFGHFVAN SSILEAFEGE SFVHVVDLGM TLGLPHGDQW XGLIESLATR 300 TGQPPTRLRI TGVGLYGDRL QIIGEELEAY ADSLGINLEF SVVXSNLENL RPXDIKMYDG 360 EVLVVNSILQ LHCVVKESRG ALNSVLQMVH ELSPKILVLV EQDSSHNGPF FLGRFMEALH 420 YYSAIFDSLD AMLPKYDTRR AKMEQFYFAE EIKNIISCEG RQGGEAREVD QWRRRMSRAG 480 FQAAPIKMLA QAKQWLGKIK VCEGYTILEE KGCLVLGWKS KPIVAASCWK C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-60 | 167 | 529 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-60 | 167 | 529 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-60 | 167 | 529 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009359535.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
Refseq | XP_028947963.1 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | A0A192ADG0 | 0.0 | A0A192ADG0_PYRPY; DELLA protein RGL2 | ||||
STRING | XP_008392964.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8730 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 1e-75 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000431628 |