PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000431628
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 532aa    MW: 58897.7 Da    PI: 6.0934
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000431628genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.21.5e-1101605301374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 
                    lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La+rla  ++  +  +  s+ s+k+   +++  al+l +e++P ++f+
  MDP0000431628 160 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLANRLALVQPLGAVGFIGSAMSTKDfaLDKKEEALRLVYEICPHIQFG 255
                    689**************************************************9955543333433444434445999999*************** PP

           GRAS  95 hltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                    h++aN+ Ilea+ege+ vH++D++++    +G QW  L+++La+R+++pp +lRiTgvg       ++l+ +ge L+ +A++lg+++ef+v v ++
  MDP0000431628 256 HFVANSSILEAFEGESFVHVVDLGMTlglpHGDQWXGLIESLATRTGQPPtRLRITGVGL----YGDRLQIIGEELEAYADSLGINLEFSV-VXSN 346
                    **********************99873333667*************88877*********....9*************************9.7*** PP

           GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                    le+l++ ++++  gE+l+Vn++lqlh +++es    +   +vL++v +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  
  MDP0000431628 347 LENLRPXDIKMYDGEVLVVNSILQLHCVVKESRGALN---SVLQMVHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTR 439
                    *****************************88877777...8******************************************************* PP

           GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    r+k+E++++++ei+n+++ceg++   + +++ +Wr+r+++aGF+++p++  + +qak  l k+k  +gy++ ee+g+lvlgWk++p+v++S+W+
  MDP0000431628 440 RAKMEQFYFAEEIKNIISCEGRQ-GGEAREVDQWRRRMSRAGFQAAPIK--MLAQAKQWLGKIKvCEGYTILEEKGCLVLGWKSKPIVAASCWK 530
                    **********************9.555556*****************97..678***************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.737134511IPR005202Transcription factor GRAS
PfamPF035145.1E-108160530IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MALSRNFLPE EYMINHERTN KMSVLDLITH SAASAMPCYP YPHTPLLEEG GTASTPPXXD  60
ESGNHKRLKR TTSISDSMSS HNSLYSGGGS GDSCITDISL SRRSSTNSLN TLPRLHFRDH  120
IWTYTQRYLA AEAVEEAAXX MSNAEGNEEE EDXTXXGMRL VQLLIACAEA VACRDKSHAS  180
ALLSELRANA LVFGSSFQRV ASCFVQGLAN RLALVQPLGA VGFIGSAMST KDFALDKKEE  240
ALRLVYEICP HIQFGHFVAN SSILEAFEGE SFVHVVDLGM TLGLPHGDQW XGLIESLATR  300
TGQPPTRLRI TGVGLYGDRL QIIGEELEAY ADSLGINLEF SVVXSNLENL RPXDIKMYDG  360
EVLVVNSILQ LHCVVKESRG ALNSVLQMVH ELSPKILVLV EQDSSHNGPF FLGRFMEALH  420
YYSAIFDSLD AMLPKYDTRR AKMEQFYFAE EIKNIISCEG RQGGEAREVD QWRRRMSRAG  480
FQAAPIKMLA QAKQWLGKIK VCEGYTILEE KGCLVLGWKS KPIVAASCWK C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6016752926378Protein SCARECROW
5b3h_A2e-6016752925377Protein SCARECROW
5b3h_D2e-6016752925377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359535.10.0PREDICTED: DELLA protein RGL1-like
RefseqXP_028947963.10.0DELLA protein RGL1-like
TrEMBLA0A192ADG00.0A0A192ADG0_PYRPY; DELLA protein RGL2
STRINGXP_008392964.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-75RGA-like 1