PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000430682
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 131aa    MW: 14837.9 Da    PI: 9.7853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000430682genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.53.9e-144898255
            AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y+G  +++ + +++AeIrd    + +  r++lg+f+t  eAak +++a+ kl g
  MDP0000430682 48 HYRGAQQRP-WDKYAAEIRDQ---NcRGSRVWLGTFDTTIEAAKTYDRAAFKLQG 98
                   799999999.**********2...3244************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.44E-2247106No hitNo description
Gene3DG3DSA:3.30.730.102.6E-2747107IPR001471AP2/ERF domain
SMARTSM003809.1E-2648112IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1948108IPR016177DNA-binding domain
PROSITE profilePS5103220.29748106IPR001471AP2/ERF domain
PfamPF008471.5E-94898IPR001471AP2/ERF domain
PRINTSPR003672.8E-104960IPR001471AP2/ERF domain
PRINTSPR003672.8E-1088108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MIIDCKACTY RMHVEEIKHT AVGSAGYQAT VKPAVVQKVS SNEEKKKHYR GAQQRPWDKY  60
AAEIRDQNCR GSRVWLGTFD TTIEAAKTYD RAAFKLQGAK AILNFPLEAG KAEPVVSVER  120
KRHHKEYRDE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2645113270ATERF1
3gcc_A3e-2645113270ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.53801e-111fruit| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324321e-108GU732432.1 Malus x domestica AP2 domain class transcription factor (AP2D8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505970.12e-53PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803411e-35EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A482LTH77e-51A0A482LTH7_9ROSA; Transcription factor ERF38
STRINGXP_008355567.11e-48(Malus domestica)
STRINGXP_008369419.11e-48(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-38ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]