PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000429775
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 636aa    MW: 71086.1 Da    PI: 7.195
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000429775genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-094294661954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  MDP0000429775 429 FEHflHPYPTDSDKLMLAKQTGLSRSQVSNWFINARVR 466
                    554459******************************88 PP
2BELL79.54.5e-263133671872
           BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     V++rYkqy++q+q+v+ sFe vaglg+a+pY++lA ka++rhF+cLk+ai+eq+
  MDP0000429775 313 LVYRRYKQYYQQMQAVARSFEYVAGLGNAAPYANLAIKALARHFKCLKNAITEQL 367
                    599**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-39214365IPR006563POX domain
PfamPF075261.4E-33219364IPR006563POX domain
PROSITE profilePS5007112.179407470IPR001356Homeobox domain
SMARTSM003891.1E-10410474IPR001356Homeobox domain
CDDcd000867.58E-13410471No hitNo description
SuperFamilySSF466895.56E-17412477IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-28413474IPR009057Homeodomain-like
PfamPF059201.2E-18427466IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR VLAGQTQPGC LQPGSPSPPP PHLHHALLPL SYDPTTTFIS  60
SSSGLLTCAD PAVKEEGSHH HVIDHLMGFA SNSTSSTFRH NNHHHPYMDP QFPLTPTAAV  120
QEINANPFLY PPQNLHPLRD FDHQQPPYDN QVVVFKPEPL SLSLSSSQPT NQHTQQTQNN  180
TNNNNLQRFS SPGINYDSLH SGVSVAFVPF GPFTGYASIL KGSRFLKPAQ HLLEEFCDVG  240
SREIYSAKVL PLEDSSFFDP PIESFGDDDS QMAGGDGGES RRQNSRLISM LDEAYAVMRE  300
RDGITKSLSD SVLVYRRYKQ YYQQMQAVAR SFEYVAGLGN AAPYANLAIK ALARHFKCLK  360
NAITEQLHFR SRNATHLRHE KDGNPILHSR SANGQRSLHN SEFLEHQPVW RPQRGLPERA  420
VTVLRAWLFE HFLHPYPTDS DKLMLAKQTG LSRSQVSNWF INARVRLWKP MVEEIHMLET  480
RQAQKTSQRV DLSSNRSSDD HLPSPNSLGS ENPSTSTHRV QDTASKRTRR ELHDHITMEA  540
TEQNVSYNNF PSHMHVGHVG MNMAGASSSG VSLTLGLHQN NGNGFSDPFP INAAQRFGLG  600
LDGNGENYAM GGFEAQNRHF ERDVMGGQFL HDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15416474563Homeobox protein Meis2
3k2a_B1e-15416474563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.130500.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378860.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_009378869.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLA0A498K4360.0A0A498K436_MALDO; Uncharacterized protein
STRINGXP_008363517.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.15e-94TALE family protein