PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000427068
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 445aa    MW: 48011.8 Da    PI: 9.7346
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000427068genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018211233223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +C++Cg++F+ ++  + H  + H
  MDP0000427068 211 TCHKCGERFTKWDAAEAHHLSkH 233
                    7*****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280212233IPR007087Zinc finger, C2H2
SuperFamilySSF563992.01E-21235443No hitNo description
Gene3DG3DSA:3.90.228.104.9E-8243441IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MPTVWFSLKK SLHCKSEPSD VHDPRGRKQL STISTRKAGG GRSGCSRSIA NLKDVIHGSK  60
RHMERPPSNC SPRSIGSSEF LNPITHEVIL SNSRCELKIT TNLGGFQDGV GGGNANNGSG  120
GGSVGGGSTF VDTLKPGTPG PGGHPTMHYF NPSLRPSSTP PRKSHFLASA ESKEGSAGFK  180
GSAFSGGAGG IRQSNRISFD TENSNGSSAI TCHKCGERFT KWDAAEAHHL SKHAVTELVE  240
GDSSRKIVEI ICRTSWLKSE NHCGRIERVL KVHNMQRTLA RFEEYREMVK TKASKLPKKH  300
PRCIADGNEL LRFYGTTVAC CLGLNGSSSL CVLEKCSVCR IIRNGFSAKK ELKEGVGVFT  360
TSTSGRAFEA IQILEEDATL RKALIVCRVI AGRVHKPLEN IQEITGQTGF DSLAGKMGLY  420
SNIEELYLLN PRALLPCFLV ICKP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.118770.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355355.10.0uncharacterized protein LOC103419013
TrEMBLA0A498K8790.0A0A498K879_MALDO; Uncharacterized protein
STRINGXP_008355355.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49831013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-131C2H2 family protein