PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000425270
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 88aa    MW: 9370.74 Da    PI: 9.3773
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000425270genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95e-134186255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +kGVr+ + +g+Wv+eI+        +  +lg+f+t  eAa a++a  +kl+g
  MDP0000425270 41 TCKGVRQMS-WGKWVVEICG-------AWLWLGTFDTSHEAALAYDATNRKLYG 86
                   58****999.*******544.......99******************9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.7494187IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-124186IPR016177DNA-binding domain
SMARTSM003804.3E-54187IPR001471AP2/ERF domain
PRINTSPR003676.8E-74253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-144386IPR001471AP2/ERF domain
PfamPF008471.8E-94386IPR001471AP2/ERF domain
CDDcd000188.29E-164387No hitNo description
PRINTSPR003676.8E-76076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MVAGSSSVGV AEKKPGKWPE QGSSRKGCMR GKGGPENAMC TCKGVRQMSW GKWVVEICGA  60
WLWLGTFDTS HEAALAYDAT NRKLYGS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008347385.26e-38dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ25e-29DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A498JHX75e-56A0A498JHX7_MALDO; Uncharacterized protein
STRINGXP_008347385.13e-38(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]