PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000420968 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TCP | ||||||||
Protein Properties | Length: 160aa MW: 17177.7 Da PI: 7.958 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 43.6 | 1.1e-13 | 4 | 85 | 37 | 103 |
TCP 37 deLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg....................kaaksaakskksqks 103 d+LG+d++sk+++WL+++ak+ai+el +++s ++++ +a+ +++n+s++ s s+++ MDP0000420968 4 DRLGYDRPSKAVDWLIKKAKAAIDELEELPSWNPHSIstTAAXPAMETQNPSATxihcfaavdaigsanrrtmvG-------SGVSEQQ 85 89***************************4444433323222223333323332444666666666544433331.......2222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 15.147 | 1 | 29 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.6E-9 | 4 | 48 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MRRDRLGYDR PSKAVDWLIK KAKAAIDELE ELPSWNPHSI STTAAXPAME TQNPSATXIH 60 CFAAVDAIGS ANRRTMVGSG VSEQQFAQNP NSNSTFLPPS LDSDAIAXTI KSFFPMGASA 120 VAAAAESPSS TIQFRQNYPP DLLSKAKLPC PPLTFCCRH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30343 | 0.0 | bud| leaf| root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB531022 | 0.0 | AB531022.1 Malus x domestica MdTCP4B mRNA, complete cds. | |||
GenBank | KM501066 | 0.0 | KM501066.1 Malus domestica TCP domain-containing protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009335205.1 | 2e-85 | PREDICTED: transcription factor TCP4-like | ||||
TrEMBL | D9ZJD0 | 5e-84 | D9ZJD0_MALDO; TCP domain class transcription factor | ||||
STRING | XP_009335205.1 | 8e-85 | (Pyrus x bretschneideri) | ||||
STRING | XP_008382081.1 | 7e-85 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 5e-28 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000420968 |