PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000418900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 159aa MW: 17428.7 Da PI: 8.7352 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.2 | 4.1e-29 | 4 | 63 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv++sae+p v++ tYegeHnh MDP0000418900 4 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQKSAENPCVLVATYEGEHNHM 63 58***************************99****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.544 | 1 | 65 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.1E-28 | 2 | 65 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-24 | 3 | 65 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-31 | 4 | 64 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.2E-24 | 5 | 62 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MQIVKDGYQW RKYGQKVTRD NPSPRAYYKC SFAPSCPVKK KVQKSAENPC VLVATYEGEH 60 NHMHPESRAE VTLIAPVSPN QNQPPISVSP SMAKRSAPPT FSCDINRISP NTTMCPQETE 120 AATFQQFLVQ QMASSLTQDP NFTSALAAAI SGRISDHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-21 | 1 | 65 | 14 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-21 | 1 | 65 | 14 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.25717 | 9e-79 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB627301 | 0.0 | AB627301.1 Malus x domestica mRNA, microsatellite: MEST165, clone: SAM01_21_E10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017189732.1 | 1e-113 | probable WRKY transcription factor 40 isoform X1 | ||||
Swissprot | Q6IEK5 | 8e-48 | WRK76_ORYSI; WRKY transcription factor WRKY76 | ||||
Swissprot | Q9SK33 | 4e-48 | WRK60_ARATH; Probable WRKY transcription factor 60 | ||||
TrEMBL | A0A498HUB3 | 1e-112 | A0A498HUB3_MALDO; Uncharacterized protein | ||||
STRING | XP_008365552.1 | 1e-115 | (Malus domestica) | ||||
STRING | XP_008378959.1 | 1e-113 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25000.1 | 2e-50 | WRKY DNA-binding protein 60 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000418900 |