PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000416279 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 586aa MW: 63436.6 Da PI: 6.7941 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 6e-30 | 263 | 322 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r aed +++++tYeg+Hnh+ MDP0000416279 263 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRFAEDISILITTYEGTHNHP 322 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.2E-31 | 248 | 324 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-27 | 256 | 324 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.392 | 258 | 324 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-34 | 263 | 323 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 264 | 322 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence Send to blast |
MEAASGKSNS HGGSEMEEER IVLESSSIAD DQEAGYKEDI IVLKMSTTSN IKGSSAEPDH 60 SVASTSSSLK EXDYQLESAR AEMGEVREEN QRLKKYLDRI TEDYQTLQMQ FYDIQQKANK 120 SKDIAIPSTI KKYNQDEESE LVSLSLGSFS GKPKWNQKND KNPSTSQGNV ENESDGESLS 180 LGLDCKYELA AKSSAXTDQV PLANPSPGSS LEEVPKEEAG KTWQPKKVLK TXRSSAIEDE 240 VAQQSPAKKA RVSVRARCDT PTMNDGCQWR KYGQKIAKGN PCPRAYYRCT IAPSCPVRKQ 300 VQRFAEDISI LITTYEGTHN HPLPMSATAM ASTTSAAASM XLSGSSSSSS GSLNPSTTAA 360 HDLHGYNFYL SDNSKSRFYT PNSSLSSSLP TITLDLTSNP SSTSNSLSHL NKFSSSSSSS 420 SRQLYPSTSH NFGSNSESNT NISWRTPLPP YNISNKNQIA PLSSLGIRQQ PLQNSMYQNY 480 MQKNINPNPN PHQGVPHQFQ PDSIAAATKA ITSDPSFQSA LAAALTSIIG NNSTVGTTGI 540 TGTLGHLKQA DGGDSSISLA QKFKWSDHFP XSTTAFSIPS VTDRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-20 | 250 | 324 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028949066.1 | 0.0 | probable WRKY transcription factor 61 | ||||
TrEMBL | A0A498I7S2 | 0.0 | A0A498I7S2_MALDO; Uncharacterized protein | ||||
STRING | XP_008374532.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 3e-63 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000416279 |