PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000413387
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 303aa    MW: 33507 Da    PI: 9.6253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000413387genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-2090139255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a+++a+ +++g
  MDP0000413387  90 VYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNTAEEAARAYDEAAVRIRG 139
                    69*******.**********954...4**********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-2290147IPR016177DNA-binding domain
SMARTSM003809.8E-3990153IPR001471AP2/ERF domain
PfamPF008478.1E-1490139IPR001471AP2/ERF domain
PROSITE profilePS5103224.11890147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3290147IPR001471AP2/ERF domain
CDDcd000181.24E-3191146No hitNo description
PRINTSPR003671.7E-1191102IPR001471AP2/ERF domain
PRINTSPR003671.7E-11113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MCGGAIISDF IAAKRGRKLT EKDLWSELDT ISDLLGIDHS NSINKQPEDY KVVQKPKPSV  60
TKATSDAKPK KATGAAAAAA AEGKRVRKNV YRGIRQRPWG KWAAEIRDPR KGVRVWLGTY  120
NTAEEAARAY DEAAVRIRGD KAKLNFSQPP PSSLLPPLAP ATPPPTKKRC IVAESTRVES  180
TQPSFHTGSY YYDTFYQGDG DMYAKNEVAD GDGGYELKEQ ISSLESFLGL DEVVAEQPSQ  240
VVSGSGDSDS LDPWMLDXLV THLQQQQQRG QFLLDKFITR AEAKNXXKLT KRHQPKETNR  300
KQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2191146359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-2191146662ATERF1
3gcc_A3e-2191146662ATERF1
5wx9_A2e-20911461571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.126170.0bud| fruit| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324390.0GU732439.1 Malus x domestica AP2 domain class transcription factor (AP2D15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315660.10.0ethylene-responsive transcription factor RAP2-3
RefseqXP_028951794.10.0ethylene-responsive transcription factor RAP2-3-like isoform X2
TrEMBLA0A498HLZ60.0A0A498HLZ6_MALDO; Uncharacterized protein
STRINGXP_008340779.11e-167(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-45ethylene-responsive element binding protein