PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000403580 | ||||||||
Common Name | AP2D55 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 387aa MW: 43102.6 Da PI: 4.4233 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 113 | 162 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g MDP0000403580 113 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 162 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 113 | 171 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-37 | 113 | 176 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.092 | 113 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 113 | 171 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.34E-32 | 113 | 171 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 114 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.8E-12 | 114 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MCGGAIISDF IAPVRSRRLT ADYLWPDLKK PSSGKRLSKP LKSEIVDLDD DFEADFQEFK 60 DESDVDEDDE MVDXKPSAFS AGNPSFARGS TAVKSVEFDG QAEKSAKRKR KNQYRGIRQR 120 PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDAEARRI RGKKAKVNFP EETPCASAKR 180 SIKENPQKLI AKTNLNGTQS NXNQNFNFVN DSSEDYYSAL GFLDEKPTMN NFRYMSTFPA 240 NEDVALKSSV PSENAPFYFS SDQGSNSFDC SDFGWGEQGS KTPEISSVIS SVMEESDNSX 300 FLEDSNPTKK MKPNSQDLEP PEDNSGKTLS DELSAFEMKY FQTPYLDESW DASVDAFLNG 360 DATQDGGNPM DLWSFDDLPA IVGGVF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-21 | 112 | 178 | 13 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.7198 | 0.0 | bud| cell culture| fruit| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in seedlings, leaves, flowers, siliques and germinating seeds. {ECO:0000269|PubMed:22020282}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732479 | 0.0 | GU732479.1 Malus x domestica AP2 domain class transcription factor (AP2D55) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280975.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q9SSA8 | 9e-93 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A498IZQ8 | 0.0 | A0A498IZQ8_MALDO; Uncharacterized protein | ||||
STRING | XP_008380747.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4808 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 9e-88 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000403580 |
Entrez Gene | 103443637 |