PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000400129
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 265aa    MW: 29024.4 Da    PI: 6.024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000400129genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-1690139155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    ++y+G+r ++  g+Wv+eIr+p++   +kr++lg+f t+e+Aa+a++ a++ l+g
  MDP0000400129  90 PRYRGIR-CR-GGKWVSEIREPRK---TKRIWLGTFPTPEMAAAAYDVAALTLKG 139
                    68****9.55.7*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-1090139IPR001471AP2/ERF domain
CDDcd000181.70E-1590147No hitNo description
Gene3DG3DSA:3.30.730.103.6E-2591147IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1791148IPR016177DNA-binding domain
SMARTSM003809.5E-2691155IPR001471AP2/ERF domain
PROSITE profilePS5103220.08691147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MADPNPNPNT SNIVHQTLDQ STPTYPHLVV XPLDFHPPPP HQVLPHSLLP LHHQTCETIE  60
MPSPSXRAPL QVQTLPKLAT MASSSSGKHP RYRGIRCRGG KWVSEIREPR KTKRIWLGTF  120
PTPEMAAAAY DVAALTLKGT DVALNFPSLI GSYPVPPSTS ALDIRTAATT AAAALRNNSD  180
QMESPKMGQM QKHEVDDMMM SSTSLASSVG YFMDEEELFQ MPNLLVDMAE GMLVSPPRMN  240
DSPPSDYDDL PGNSDGREGR LWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13881471172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008381395.20.0ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ909e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A498JYS11e-143A0A498JYS1_MALDO; Uncharacterized protein
STRINGXP_008381395.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-44ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]