PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000395022

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C3H

Protein Properties

Length: 1254aa MW: 138669 Da PI: 6.2269

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000395022	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.2e-06	644	666	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C G++C F+Hgp MDP0000395022 644 VPCIFFQK-GQCLKGEKCAFSHGP 666 69****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03763	7.3E-30	445	553	IPR005516	Remorin, C-terminal
PROSITE profile	PS50103	15.206	640	667	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-5	640	666	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.24E-5	641	665	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-4	645	666	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1254 aa Download sequence Send to blast
MLTWLNHDHT NKRHRRASEV GGQTILVQNN QRGPXFEFIG XLIGDLKVQV GGGGFSPGKL 60 RSMLLGVEKK RKENEDTEXA FTLRSQPPDF DDQAGGGASD NCKDVDVVSV HPKCSTLNAA 120 DSLGPEMGSD QRLKDSXLVN SRIRSQEDPS LDYGSGCDAM SVSASMFEFQ KAEXAPQRVP 180 LAPFSKPAPS KWDDAQKWIA SPTWNRPKMG QVQMQGGQGV GLQKVGSFGY GSGQSSCSTK 240 VVVEVPDQKV DIFEEPDTKR IDTSQPKTAN GGQKCVSWEP DPYPIADSYG KSVLMVEXSV 300 GESAINLSQH DSSTAFHGTT IFIPPPSTAR SVSMRDMGTE MTPIASQEPS RTGTPVGATT 360 PIRSPNXSSP STPSRAAPTS SPIDQNTNKE LSEKELQLKT RXEIMVLGTQ LGKMNIAAWA 420 SKEEDKDASA SQKTVLEEQP GTSVIETRAA AWEESEKAKY MARFKREEMK IQAWENHQKA 480 KTEAEMRKIE FIETDSRCFQ VEVERIRGRA HXKLMNKLAA ARHKAQEKRX AAEAKRNRQA 540 AKAEHQAEYI RKTVGAHPQP QPQQQLQQKP PQQPETSAEE EALKRNTDCV YFLASPLTCK 600 KPLDGLLGSP AANSAGPSLP LSHPGVTPTX PATHAAYNPS KQAVPCIFFQ KGQCLKGEKC 660 AFSHGPNPMA SSKFLQTPAA PHGTEPSGLK KAFGGLQKCI QELKVPKASV AKSVGVPPEA 720 KPAPKILTAP IRNGVSIERN VQSTKALDDE ALRYKATSVP PVINGGSTSR ANHLPQVHVS 780 DYHGFQNVKD VDEHLRESSP GFDVLVDDEL GDSDYYHGED RYGRTRGHEG RNLNSVNEYD 840 LDRPVDYTSM ADVDRERFCD PRGYDPYDRM QGQYAWDQHR ASSERQLVGP ARLERRGYRK 900 SESPENIDEL DLRHRLSKHR RVNGLRSIVS HDYAVDGHVE ERNNRPLRDS QQLPPHEGSR 960 SSRLHGRIKL PGGSSPVNGS DLHQEREVDR ARSQGRLSPR RPQISSHQGR LRDRIKGRVE 1020 EDYDNERRNF GAPLVRREIM DDRGDDFSRP KRLPDLKVVK DAENKEQSYL GKRKSVMDNN 1080 NQAVGDLSFE GPKPLSEILK RKREAEAAAA SGSRKSSAHD KRGNNQRESR ESNQGNSQTA 1140 VTETNNSLPP AAKEEPKFAM ADAVGTEDEK VDVAPGQSSE GHEVGEVEAE EGMIYEENEI 1200 EGDDQREGEY DYEQGDEGDY NYEEGENAEG EEEYLEEDED GDDFAKKIGV MFS*

Sequence ? help Back to Top

Protein Sequence Length: 1254 aa Download sequence Send to blast

MLTWLNHDHT NKRHRRASEV GGQTILVQNN QRGPXFEFIG XLIGDLKVQV GGGGFSPGKL  60
RSMLLGVEKK RKENEDTEXA FTLRSQPPDF DDQAGGGASD NCKDVDVVSV HPKCSTLNAA  120
DSLGPEMGSD QRLKDSXLVN SRIRSQEDPS LDYGSGCDAM SVSASMFEFQ KAEXAPQRVP  180
LAPFSKPAPS KWDDAQKWIA SPTWNRPKMG QVQMQGGQGV GLQKVGSFGY GSGQSSCSTK  240
VVVEVPDQKV DIFEEPDTKR IDTSQPKTAN GGQKCVSWEP DPYPIADSYG KSVLMVEXSV  300
GESAINLSQH DSSTAFHGTT IFIPPPSTAR SVSMRDMGTE MTPIASQEPS RTGTPVGATT  360
PIRSPNXSSP STPSRAAPTS SPIDQNTNKE LSEKELQLKT RXEIMVLGTQ LGKMNIAAWA  420
SKEEDKDASA SQKTVLEEQP GTSVIETRAA AWEESEKAKY MARFKREEMK IQAWENHQKA  480
KTEAEMRKIE FIETDSRCFQ VEVERIRGRA HXKLMNKLAA ARHKAQEKRX AAEAKRNRQA  540
AKAEHQAEYI RKTVGAHPQP QPQQQLQQKP PQQPETSAEE EALKRNTDCV YFLASPLTCK  600
KPLDGLLGSP AANSAGPSLP LSHPGVTPTX PATHAAYNPS KQAVPCIFFQ KGQCLKGEKC  660
AFSHGPNPMA SSKFLQTPAA PHGTEPSGLK KAFGGLQKCI QELKVPKASV AKSVGVPPEA  720
KPAPKILTAP IRNGVSIERN VQSTKALDDE ALRYKATSVP PVINGGSTSR ANHLPQVHVS  780
DYHGFQNVKD VDEHLRESSP GFDVLVDDEL GDSDYYHGED RYGRTRGHEG RNLNSVNEYD  840
LDRPVDYTSM ADVDRERFCD PRGYDPYDRM QGQYAWDQHR ASSERQLVGP ARLERRGYRK  900
SESPENIDEL DLRHRLSKHR RVNGLRSIVS HDYAVDGHVE ERNNRPLRDS QQLPPHEGSR  960
SSRLHGRIKL PGGSSPVNGS DLHQEREVDR ARSQGRLSPR RPQISSHQGR LRDRIKGRVE  1020
EDYDNERRNF GAPLVRREIM DDRGDDFSRP KRLPDLKVVK DAENKEQSYL GKRKSVMDNN  1080
NQAVGDLSFE GPKPLSEILK RKREAEAAAA SGSRKSSAHD KRGNNQRESR ESNQGNSQTA  1140
VTETNNSLPP AAKEEPKFAM ADAVGTEDEK VDVAPGQSSE GHEVGEVEAE EGMIYEENEI  1200
EGDDQREGEY DYEQGDEGDY NYEEGENAEG EEEYLEEDED GDDFAKKIGV MFS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.1236	9e-96	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028946991.1	0.0	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 17-like
TrEMBL	A0A498IA47	0.0	A0A498IA47_MALDO; Uncharacterized protein
STRING	XP_008389960.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9227	31	37

Link Out ? help Back to Top
Phytozome	MDP0000395022