PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000393985 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TCP | ||||||||
Protein Properties | Length: 197aa MW: 22040.9 Da PI: 7.8013 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 74.7 | 2.6e-23 | 111 | 177 | 4 | 70 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 h +hTkv+g +RRv + a caa++F+L++eLG+ d++tieWL++ a+p+i++ t+ ++ s MDP0000393985 111 NPLEHQGRHTKVNGWGRRVLMLAMCAAQIFQLTQELGHRFDGETIEWLIRHAEPSIIASTDFGTLST 177 5567999***************************************************998754444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 17.346 | 115 | 169 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.7E-18 | 117 | 179 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MNEHDIQIPK IVTKKIQKEX DGXKSMQLTL LQDPXQRIRT EALLSSSPHT SLQSQIIDDP 60 PASAQTRRPK PDRDPHSHFD FFHHPNSSIX LAFPTIRPLT XGPAQAPKTG NPLEHQGRHT 120 KVNGWGRRVL MLAMCAAQIF QLTQELGHRF DGETIEWLIR HAEPSIIAST DFGTLSTEPI 180 STTTMFVSSQ MPFIPC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 8e-24 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000393985 |