PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000389745
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 902aa    MW: 98114.4 Da    PI: 6.4116
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000389745genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.1e-2081136156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  MDP0000389745  81 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 136
                    688999***********************************************999 PP

2START219.79.3e-692714921206
                    HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
          START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                    ela +a++elv++a+ +ep+W++s     + +n+de++++f+++ +     +++ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a tle
  MDP0000389745 271 ELAVAAMEELVRMAQMGEPLWMTSLdgsmTVLNEDEYIRTFPRGVGpkqngFKTEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsRALTLE 365
                    57899********************999999**********9976699999***************************.***************** PP

                    EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
          START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                    v+s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ +++p       ++++pSg+li++++ng+skvtwveh+++
  MDP0000389745 366 VLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDNLRPNPA---PRSCQRRPSGCLIQEMPNGYSKVTWVEHAEV 458
                    *************************************************************4...455789************************* PP

                    -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                    ++r +h+l+++lv+sg+a+gak+wvatl+rqce+
  MDP0000389745 459 DERGVHNLYKQLVSSGHAFGAKRWVATLDRQCER 492
                    ********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-2360136IPR009057Homeodomain-like
SuperFamilySSF466891.21E-1967138IPR009057Homeodomain-like
PROSITE profilePS5007116.95778138IPR001356Homeobox domain
SMARTSM003894.8E-2079142IPR001356Homeobox domain
PfamPF000465.3E-1881136IPR001356Homeobox domain
CDDcd000863.65E-1981139No hitNo description
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PROSITE profilePS5084843.618262495IPR002913START domain
SuperFamilySSF559612.75E-35264494No hitNo description
CDDcd088751.56E-130266491No hitNo description
SMARTSM002342.6E-65271492IPR002913START domain
PfamPF018522.1E-58272492IPR002913START domain
Gene3DG3DSA:3.30.530.207.8E-5369473IPR023393START-like domain
SuperFamilySSF559614.09E-24511723No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MPSMIGSNGN INGFASSSGL TLGQPNMMEA GHLHPLDMAT NTSESDIARF RDDDFDSATK  60
SGSDNPEGGS GDDQENXRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR KELSRELGLE  120
PLQVKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRADNMR YREALGNASC PNCGGPTALG  180
EMSFDEHHLR LDNARLREEI DRISAIAAKY VGKPLGNYPL MSSPVPSRGP LDLGVGSFGG  240
QPGMGGEMYG AGDLLRSISA PSEADKPMII ELAVAAMEEL VRMAQMGEPL WMTSLDGSMT  300
VLNEDEYIRT FPRGVGPKQN GFKTEASRES AVVIMNHINL VEILMDVNQW STVFSGIVSR  360
ALTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHADG TWAVVDVSLD  420
NLRPNPAPRS CQRRPSGCLI QEMPNGYSKV TWVEHAEVDE RGVHNLYKQL VSSGHAFGAK  480
RWVATLDRQC ERLASAMASN IPTGDVGVIT NQEGRKSMLK LAERMVISFC AGVSASTTHT  540
WTTLSGTGAD DVRVMTRKSV DDPGRPPGIV LSAATSFWLP VPPKRVFEFL RDENSRSEWD  600
ILSNGGIVQE MAHIANGRDT GNCVSLLRVN SANSSQSNML ILQESCSDPT ASFVIYAPVD  660
IVSMNVVLNG SDPDYVALLP SGFAILPDGA GIGDSGSGGG SLLTVAFQIL VDSVPTAKLS  720
LGSVATNRSH LKDDDQSTLL PQYTCVPPPP FSSNPHNSSN HHHYYPKTSS YSSFASFKGC  780
CCCLFLLFSF LALLVLVVKP KKLPFNVQQV GNPIPPQPKP HLCLPLPQXS HAALTVSPSS  840
LSCTTGFHWA WRATKAGGVE GVAEEVEVEA GGEVGVPGDG CRRVDWGRRM GFVGLGPTIF  900
N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.217243e-39fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008348131.20.0homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_008348132.20.0homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A498J5M20.0A0A498J5M2_MALDO; Uncharacterized protein
STRINGXP_008348131.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2