PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000389745 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 902aa MW: 98114.4 Da PI: 6.4116 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64 | 2.1e-20 | 81 | 136 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k MDP0000389745 81 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 136 688999***********************************************999 PP | |||||||
2 | START | 219.7 | 9.3e-69 | 271 | 492 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ela +a++elv++a+ +ep+W++s + +n+de++++f+++ + +++ea+r+s+vv+m++ +lve+l+d++ qW++ + +a tle MDP0000389745 271 ELAVAAMEELVRMAQMGEPLWMTSLdgsmTVLNEDEYIRTFPRGVGpkqngFKTEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsRALTLE 365 57899********************999999**********9976699999***************************.***************** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 v+s+g galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ +++p ++++pSg+li++++ng+skvtwveh+++ MDP0000389745 366 VLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDNLRPNPA---PRSCQRRPSGCLIQEMPNGYSKVTWVEHAEV 458 *************************************************************4...455789************************* PP -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206 ++r +h+l+++lv+sg+a+gak+wvatl+rqce+ MDP0000389745 459 DERGVHNLYKQLVSSGHAFGAKRWVATLDRQCER 492 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 60 | 136 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.21E-19 | 67 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 78 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-20 | 79 | 142 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.3E-18 | 81 | 136 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.65E-19 | 81 | 139 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 113 | 136 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.618 | 262 | 495 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.75E-35 | 264 | 494 | No hit | No description |
CDD | cd08875 | 1.56E-130 | 266 | 491 | No hit | No description |
SMART | SM00234 | 2.6E-65 | 271 | 492 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-58 | 272 | 492 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.8E-5 | 369 | 473 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.09E-24 | 511 | 723 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 902 aa Download sequence Send to blast |
MPSMIGSNGN INGFASSSGL TLGQPNMMEA GHLHPLDMAT NTSESDIARF RDDDFDSATK 60 SGSDNPEGGS GDDQENXRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR KELSRELGLE 120 PLQVKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRADNMR YREALGNASC PNCGGPTALG 180 EMSFDEHHLR LDNARLREEI DRISAIAAKY VGKPLGNYPL MSSPVPSRGP LDLGVGSFGG 240 QPGMGGEMYG AGDLLRSISA PSEADKPMII ELAVAAMEEL VRMAQMGEPL WMTSLDGSMT 300 VLNEDEYIRT FPRGVGPKQN GFKTEASRES AVVIMNHINL VEILMDVNQW STVFSGIVSR 360 ALTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHADG TWAVVDVSLD 420 NLRPNPAPRS CQRRPSGCLI QEMPNGYSKV TWVEHAEVDE RGVHNLYKQL VSSGHAFGAK 480 RWVATLDRQC ERLASAMASN IPTGDVGVIT NQEGRKSMLK LAERMVISFC AGVSASTTHT 540 WTTLSGTGAD DVRVMTRKSV DDPGRPPGIV LSAATSFWLP VPPKRVFEFL RDENSRSEWD 600 ILSNGGIVQE MAHIANGRDT GNCVSLLRVN SANSSQSNML ILQESCSDPT ASFVIYAPVD 660 IVSMNVVLNG SDPDYVALLP SGFAILPDGA GIGDSGSGGG SLLTVAFQIL VDSVPTAKLS 720 LGSVATNRSH LKDDDQSTLL PQYTCVPPPP FSSNPHNSSN HHHYYPKTSS YSSFASFKGC 780 CCCLFLLFSF LALLVLVVKP KKLPFNVQQV GNPIPPQPKP HLCLPLPQXS HAALTVSPSS 840 LSCTTGFHWA WRATKAGGVE GVAEEVEVEA GGEVGVPGDG CRRVDWGRRM GFVGLGPTIF 900 N* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.21724 | 3e-39 | fruit| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008348131.2 | 0.0 | homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Refseq | XP_008348132.2 | 0.0 | homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A498J5M2 | 0.0 | A0A498J5M2_MALDO; Uncharacterized protein | ||||
STRING | XP_008348131.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000389745 |