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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
MDP0000389025 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family |
GRAS |
| Protein Properties |
Length: 463aa MW: 52601.4 Da PI: 6.506 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000389025 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 373.6 | 2.6e-114 | 60 | 461 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaal............ 81
l++lL++cAe +s+ d+ a++l++ ls ++sp gd+++Rl+++f++AL rl+ + + ++ p ++ ++ s+++
MDP0000389025 60 LRHLLITCAELISHLDFPSAHRLISLLSSNSSPFGDSTERLTHHFVKALCFRLNTNPNYSPTTIGPLTALTNAasaSASS---Ssnylflpvlqee 152
68****************************************************93222222332222222221112222...2456899999*** PP
GRAS 82 .............klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeel 158
++++++P+++fshltaNqaIlea++ + +Hi+Dfdi++G+QWp+L+qaL +R+ ++pp+lRiT+ g+ + l
MDP0000389025 153 eednneealhscyLTLNQITPFIRFSHLTANQAILEAIDAShLSIHILDFDIMHGVQWPPLMQALVERSynsplHPPPTLRITATGR----DLSLL 244
**9999999887566************************996789************************87777779**********....99*** PP
GRAS 159 eetgerLakfAeelgvpfefnvlvakrl....edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
+tgerL +fA++lg+ f+f++lv +++ + +++++L ++++E+laVn+vl lh+l+ ++ +L+ +ksl+Pkv++++++ea+hn+
MDP0000389025 245 LRTGERLLRFAQSLGLAFQFHPLVLNNTsppsDLISPSTLGLHQNEVLAVNCVLYLHTLVTDDSRD---LFLFLQKIKSLNPKVFTIANKEANHNN 337
***********************666542222788************************9444433...4589*********************** PP
GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek.WrerleeaGFkpvplsekaakqaklllrkvk 345
+ F++rf+eal++y a+fdslea+lp++s+er +vE+ +grei++vv eg++r++rhe++e+ W+ l+++GF++vpls +a +qaklllr ++
MDP0000389025 338 HLFFNRFVEALDHYGAVFDSLEATLPPNSRERLVVEEW-FGREIKDVVGVEGEKRKQRHESYETfWEVVLRRVGFENVPLSPFALSQAKLLLRLHY 432
************************************97.**********************9977******************************* PP
GRAS 346 .sdgyrveeesgslvlgWkdrpLvsvSaW 373
s+gy++ ++s++lgW++rpL+svS+W
MDP0000389025 433 pSEGYQLRMFNDSFFLGWQNRPLFSVSSW 461
***************************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 463 aa
Download sequence Send
to blast |
MGSFHSSHIQ QEEEEDHLNH PNNNNISDLQ LYHHHLHHHH ISDQPSLIMS TSPSISPTHL 60
RHLLITCAEL ISHLDFPSAH RLISLLSSNS SPFGDSTERL THHFVKALCF RLNTNPNYSP 120
TTIGPLTALT NAASASASSS SNYLFLPVLQ EEEEDNNEEA LHSCYLTLNQ ITPFIRFSHL 180
TANQAILEAI DASHLSIHIL DFDIMHGVQW PPLMQALVER SYNSPLHPPP TLRITATGRD 240
LSLLLRTGER LLRFAQSLGL AFQFHPLVLN NTSPPSDLIS PSTLGLHQNE VLAVNCVLYL 300
HTLVTDDSRD LFLFLQKIKS LNPKVFTIAN KEANHNNHLF FNRFVEALDH YGAVFDSLEA 360
TLPPNSRERL VVEEWFGREI KDVVGVEGEK RKQRHESYET FWEVVLRRVG FENVPLSPFA 420
LSQAKLLLRL HYPSEGYQLR MFNDSFFLGW QNRPLFSVSS WH*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC307959 | 0.0 | KC307959.1 Malus x domestica lateral suppressor protein (LAS1) mRNA, complete cds. |
