PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000384932

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

ERF

Protein Properties

Length: 120aa MW: 13317.9 Da PI: 11.1314

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000384932	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.8	1.3e-13	30	70	2	47
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaai 47 +y+GVr ++ +gr++AeIrd ++ ++r++lg+fg ee + a+ MDP0000384932 30 RYQGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFGP-EESSRSAD 70 69*****.******883....5********.99999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.3E-8	30	70	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	14.144	30	69	IPR001471	AP2/ERF domain
SMART	SM00380	6.6E-9	30	84	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.9E-16	30	66	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.62E-10	30	67	IPR016177	DNA-binding domain
CDD	cd00018	2.74E-13	30	70	No hit	No description
PRINTS	PR00367	5.4E-7	31	42	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.4E-7	53	69	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MRRGRGAATR PATPPAEPTE SRPCIGKEVR YQGVRKRPWG RFAAEIRDPW KKTRVWLGTF 60 GPEESSRSAD SGGSTPFPPF SKPSSASSSS APSSSSSEHP PRENIEKISK ISRYYRYYR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.30212	1e-157	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:11487705, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU732477	1e-154	GU732477.1 Malus x domestica AP2 domain class transcription factor (AP2D53) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009361043.1	1e-28	PREDICTED: ethylene-responsive transcription factor 3-like
Swissprot	O80339	1e-18	ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBL	D5L137	6e-38	D5L137_MALDO; AP2 domain class transcription factor
STRING	XP_009361043.1	5e-28	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15712	7	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28360.1	5e-19	ERF domain protein 12

Link Out ? help Back to Top
Phytozome	MDP0000384932

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]