PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000380874 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 106aa MW: 11603.2 Da PI: 7.4675 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 84.5 | 1.1e-26 | 50 | 105 | 2 | 55 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegt...aaalkCaACgCHRnFHRr 55 ++vrYkeClkNh a++G +a+DGCgEfmp+ geegt ++l+C+AC+CH+nFHR+ MDP0000380874 50 NGVRYKECLKNHVAAIGETAMDGCGEFMPN-GEEGTieaLKGLNCSACNCHKNFHRK 105 579**************************8.8887733355678************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-17 | 52 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.9E-25 | 52 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.9E-26 | 53 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.378 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MDRDREANTR CTWFTQIGYV HGVEEFSLIV KGLHKYIGSS SPVVSTIGHN GVRYKECLKN 60 HVAAIGETAM DGCGEFMPNG EEGTIEALKG LNCSACNCHK NFHRK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2657 | 1e-64 | bud| cell culture| fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU794445 | 1e-61 | EU794445.1 Malus floribunda clone M18S-5Cs Vf apple scab resistance protein HcrVf2-like gene, complete sequence. | |||
GenBank | FN823235 | 1e-61 | FN823235.1 Malus x domestica genomic sequence for BAC clone MC-20 containing a Mal d 1 gene cluster. | |||
GenBank | HF968766 | 1e-61 | HF968766.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, non-columnar allele. | |||
GenBank | KF055410 | 1e-61 | KF055410.1 Malus domestica cultivar GMAL 2473 clone BAC 32A4 Rvi15 scab resistance gene locus, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009355386.1 | 3e-27 | PREDICTED: zinc-finger homeodomain protein 3 | ||||
Swissprot | Q2QW44 | 5e-22 | ZHD3_ORYSJ; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A498JEN2 | 8e-28 | A0A498JEN2_MALDO; Uncharacterized protein | ||||
STRING | XP_008378952.1 | 2e-28 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 1e-23 | homeobox protein 33 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000380874 |