PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000375005
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YA
Protein Properties Length: 323aa    MW: 35416 Da    PI: 10.396
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000375005genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA941.7e-29119174258
      CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     p+YVNaKQy++I++RRq+Rak+  e++  ++ rkpy+heSRh+hA+rRpRg+gGrF
  MDP0000375005 119 GPIYVNAKQYHGIIRRRQSRAKAVIENRA-ARLRKPYMHESRHRHAMRRPRGCGGRF 174
                    69***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-32116177IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.387117177IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.9E-26120174IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-23120142IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-23151174IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAMQTVYFKE HEGIAPNPIG QFSSALSGPW WSAFGSQPVY GESCGQSKPF TREQPNTGQG  60
TEQGLEKGHT NLFTIFPGDG QKSQAAIAPP GKYRGHFELG FSQPMGRIML PLNLTTDEGP  120
IYVNAKQYHG IIRRRQSRAK AVIENRAARL RKPYMHESRH RHAMRRPRGC GGRFLNTKTM  180
NNGNKGTEGK QGGDGQLFRF SGSQSPEVLQ SDSGTLNSSK ETNGSSSNIS GSEVSSMYSR  240
GDLDRFSINH LGPSLHSLSN MMDSARGMVI PTKWVAAGDN RCNLKAIHPW LMAIHPWLMR  300
KGFPAIRCSH PVRAACENLE AA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-17118182266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158167RHRHAMRRPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391985.10.0nuclear transcription factor Y subunit A-10-like
TrEMBLA0A498I4M80.0A0A498I4M8_MALDO; Uncharacterized protein
STRINGXP_008391985.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-45nuclear factor Y, subunit A10