PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000372694

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

ZF-HD

Protein Properties

Length: 363aa MW: 39314.9 Da PI: 6.9597

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000372694	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101	8e-32	125	182	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrYkeClkNhAa++Gg a+DGCgEfmps geegt++al+C+AC+CHRnFHR+eve e MDP0000372694 125 NGVRYKECLKNHAAAMGGSAMDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEVEGE 182 579************************9.999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-24	127	182	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.9E-29	127	179	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.8E-31	128	179	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.471	129	178	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MDHLSSQGEI PITIPSPTPI LINTSFGSGG HGHLIHHHQQ QRPHDPTSAA ARAPVPQNNN 60 KHSNFLPSSA VVPQNQIPPN TNGSIPMPTS LDHSHEEEEH HVNNANANVV PYXYSTFNNK 120 KVGHNGVRYK ECLKNHAAAM GGSAMDGCGE FMPSGEEGTI EALNCSACNC HRNFHRKEVE 180 GEQQQLSSWD HNFHHTINRA VGIGSRNFLL NHGGGGGGGH HKSLLAPLQY PHQPQMLMSN 240 YNMGMGMVGS ILSDQSDEQE VHHHPHHGGG GGXGQQATSR TGSKEKVQDK VYTGAEGKNV 300 KLCRESRVED SEAGRLICPK LLPRDWGQEK GSQGLDAQQQ TQSSQQDQTT TPFPTCPLII 360 NI*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MDHLSSQGEI PITIPSPTPI LINTSFGSGG HGHLIHHHQQ QRPHDPTSAA ARAPVPQNNN  60
KHSNFLPSSA VVPQNQIPPN TNGSIPMPTS LDHSHEEEEH HVNNANANVV PYXYSTFNNK  120
KVGHNGVRYK ECLKNHAAAM GGSAMDGCGE FMPSGEEGTI EALNCSACNC HRNFHRKEVE  180
GEQQQLSSWD HNFHHTINRA VGIGSRNFLL NHGGGGGGGH HKSLLAPLQY PHQPQMLMSN  240
YNMGMGMVGS ILSDQSDEQE VHHHPHHGGG GGXGQQATSR TGSKEKVQDK VYTGAEGKNV  300
KLCRESRVED SEAGRLICPK LLPRDWGQEK GSQGLDAQQQ TQSSQQDQTT TPFPTCPLII  360
NI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.24288	1e-157	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ492960	4e-49	FJ492960.1 Rhamnus alaternus microsatellite RaA117 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009355386.1	1e-121	PREDICTED: zinc-finger homeodomain protein 3
TrEMBL	A0A498JEN2	1e-153	A0A498JEN2_MALDO; Uncharacterized protein
STRING	XP_008378952.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	8e-31	homeobox protein 21

Link Out ? help Back to Top
Phytozome	MDP0000372694