PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000363156 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 159aa MW: 18151.1 Da PI: 8.9551 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.5 | 7.2e-11 | 98 | 122 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C ++++tGtCky ++C F+H+ MDP0000363156 98 GKADCLHYMQTGTCKYENNCLFNHP 122 6789********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 8.2E-5 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.591 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-8 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 100 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-5 | 102 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
KNVSKDKAKR REELAVKQDQ TESKKVFKDK PRQRGELAEK QGQTKNKKVF KDNAKQRGEL 60 AEKQGQTRNK YCPGQCKGEP SVAPALELNF LGLPIRPGKA DCLHYMQTGT CKYENNCLFN 120 HPDPTPLEES RPQSTYESHG IHSETAEWND VITPYGWEX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.6467 | 0.0 | bud| fruit| leaf |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959724.1 | 9e-95 | trichohyalin-like isoform X12 | ||||
Refseq | XP_028959725.1 | 1e-94 | trichohyalin-like isoform X13 | ||||
Refseq | XP_028959726.1 | 1e-94 | caldesmon-like isoform X14 | ||||
Refseq | XP_028959750.1 | 1e-95 | vicilin-like seed storage protein At2g18540 isoform X37 | ||||
TrEMBL | A0A498JJL4 | 4e-81 | A0A498JJL4_MALDO; Uncharacterized protein | ||||
TrEMBL | A0A498JK69 | 3e-84 | A0A498JK69_MALDO; Uncharacterized protein | ||||
STRING | XP_008384274.1 | 1e-109 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-15 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000363156 |