PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000362244 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 287aa MW: 31138.4 Da PI: 4.4511 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 260 | 283 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C+ksF++ L +H + H MDP0000362244 260 HSCKTCSKSFNSDGALSSHNKAkH 283 79*****************88766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03066 | 9.8E-7 | 3 | 173 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 260 | 287 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 262 | 283 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MEFWGVEVKA GEPLKVVPEE SYVIHLSQAT LGELKKGGDQ CVIHVKVGDQ KLVLANLSSD 60 KMPQIPFDLV FDKEFELSHN LKSGSVHFCG YQTYIANESD EDQXDFDSES EEDLPLNFTG 120 NGNIVEAKPA PPKTNTVKPE SSGKQKVKIE EPIKDEDDSD DSDEDDSDDD ESSDEDMLGA 180 DSSDEDEEDS EEEEDTPTPK KDSKKRPNES APKTPVSAKK AKQVTPQKTD GKKGAHTATP 240 HPAKKGGKTP QTPNSAGGDH SCKTCSKSFN SDGALSSHNK AKHGAKX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2351 | 0.0 | bud| cell culture| fruit| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during fertilization, while it is repressed during seed development. {ECO:0000269|PubMed:15082924}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in ovaries. Accumulates predominantly in the micropylar region of the ovule's integument. {ECO:0000269|PubMed:15082924}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008355217.2 | 0.0 | histone deacetylase HDT1-like | ||||
Swissprot | Q6V9I6 | 6e-67 | HDT1_SOLCH; Histone deacetylase HDT1 | ||||
TrEMBL | A0A498J4Z7 | 0.0 | A0A498J4Z7_MALDO; Uncharacterized protein | ||||
STRING | XP_008363529.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 7e-35 | histone deacetylase 3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000362244 |
Publications ? help Back to Top | |||
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