PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000333691

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

G2-like

Protein Properties

Length: 184aa MW: 20242.9 Da PI: 5.0433

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000333691	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	68.1	1.5e-21	1	39	17	55
G2-like 17 aveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ MDP0000333691 1 AVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 39 89************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.23E-7	1	40	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-18	1	39	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-15	1	39	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQMYRTV KTTDKAAASS GQSDVYENAS 60 SGDTTEDIMY ELQNPRRSCE QLPSPQQGSR STTVQNNKEY YGLWSNSSSR EAWLHANPND 120 SASANIITSL DDQEREDLNM MDPKGLSYER ISDVSSSSTN ISAGGTSLSP RKPNLEFTLG 180 RSHX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.25329	1e-144	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269\|PubMed:14561401}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008341059.1	1e-130	probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	6e-49	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A498HJ85	1e-128	A0A498HJ85_MALDO; Uncharacterized protein
STRING	XP_008341059.1	1e-130	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5968	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-50	G2-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000333691

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]