PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000331808

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

YABBY

Protein Properties

Length: 185aa MW: 20461.4 Da PI: 8.9179

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000331808	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	229.2	1.1e-70	6	165	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 +se+vCyv+CnfCntilavsvP +sl ++vtvrCGhC++llsvn + q ++ + + k++l e+ + +n+ s ++++s+s++ + MDP0000331808 6 MASERVCYVHCNFCNTILAVSVPCNSLXNMVTVRCGHCANLLSVNTGGSLQSTTIPPQ--DPQKQHLSSEDSN--KNCGSSSSSSSSKSNKFGH-A 96 579********************************************999999997..4444444444433..3334433333333333333.4 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ e +e prv p i PPekrqrvPsaynrfikeeiqrikasnPdishreafs aaknWahfP+ihfgl MDP0000331808 97 FESLELHEQPRVSP-IPPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSKAAKNWAHFPHIHFGL 165 46777888899888.89*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.9E-72	7	165	IPR006780	YABBY protein
SuperFamily	SSF47095	1.13E-8	109	158	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.7E-5	114	157	IPR009071	High mobility group box domain
CDD	cd01390	8.46E-6	119	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSMDLMASER VCYVHCNFCN TILAVSVPCN SLXNMVTVRC GHCANLLSVN TGGSLQSTTI 60 PPQDPQKQHL SSEDSNKNCG SSSSSSSSKS NKFGHAFESL ELHEQPRVSP IPPPEKRQRV 120 PSAYNRFIKE EIQRIKASNP DISHREAFSK AAKNWAHFPH IHFGLKLDXN KQPKLDQAFA 180 GKGTX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12099	0.0	fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008385589.2	1e-134	putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	7e-77	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	D9ZJG5	1e-108	D9ZJG5_MALDO; YABBY domain class transcription factor
STRING	XP_009378606.1	1e-108	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-71	YABBY family protein

Link Out ? help Back to Top
Phytozome	MDP0000331808

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]