PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000326906
Common NameMADS24
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26669.2 Da    PI: 9.6465
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000326906genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.2e-31959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  MDP0000326906  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTSGKLYEFCS 59
                   79***********************************************96 PP
2K-box96.44.3e-32801737100
          K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     s+++++++s +qe+ kLk ++e Lqr+qRhllGedL  L  keLqqLe+qL+ s+kkiRs+K+++++ qi+elq+ke++l e+n+ Lr+klee
  MDP0000326906  80 ASQSAEDEQSRYQEYLKLKTKVEALQRTQRHLLGEDLVHLGTKELQQLENQLDVSMKKIRSTKTQFMHVQISELQRKEEMLLEANTGLRRKLEE 173
                    45778899***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.067161IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.76E-42278No hitNo description
SuperFamilySSF554553.4E-32278IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.5E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-333859IPR002100Transcription factor, MADS-box
PfamPF014867.6E-2884171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.95187177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFST SGKLYEFCSG  60
PSIAKTLERH QRCTYGELGA SQSAEDEQSR YQEYLKLKTK VEALQRTQRH LLGEDLVHLG  120
TKELQQLENQ LDVSMKKIRS TKTQFMHVQI SELQRKEEML LEANTGLRRK LEEITAGHQR  180
SWNGNHQAAQ LEGFPEHLQY NNALQIGYNH ISYRDSVKRM NFSATLINEL X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-248717117101Developmental protein SEPALLATA 3
4ox0_B3e-248717117101Developmental protein SEPALLATA 3
4ox0_C3e-248717117101Developmental protein SEPALLATA 3
4ox0_D3e-248717117101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29570.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankMDU789500.0U78950.1 Malus domestica MADS-box protein 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315971.11e-164MADS-box protein CMB1-like
SwissprotQ8LLR23e-93MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLD9ZJ441e-162D9ZJ44_MALDO; MADS domain class transcription factor
STRINGXP_008350888.11e-150(Malus domestica)
STRINGXP_008360083.11e-150(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.21e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]