PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000325672

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 353aa MW: 38711.6 Da PI: 9.5385

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000325672	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.2	1.9e-13	81	125	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky MDP0000325672 81 RESWTEQEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 125 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.32E-16	75	131	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.986	76	130	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-7	79	131	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-18	79	128	IPR006447	Myb domain, plants
SMART	SM00717	7.9E-11	80	128	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-11	81	125	IPR001005	SANT/Myb domain
CDD	cd00167	2.55E-8	83	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MLSLNPNPAQ GFYLFDPMNT NMGLPGLNPM PPPTTGAASA TAATSTTAAC TSSSAPANAA 60 SMSADDQSKK IRKPYTITKS RESWTEQEHD KFLEALQLFD RDWKKIEAFI GSKTVIQIRS 120 HAQKYFLKVQ KKGTSEHVPP PRPKRKATHP YPQKAPKSAA XVSQVAGPFQ SSSXLLEHGY 180 VYQPDSSIVL GTPVNAATLL SWSYNSVPPV NVXQTIKDEG RLSGPTVTHN SCYSSSNESN 240 PTNWKVSETV DRVDPGQPHR VLPDFAQVYK FIGSVFDPSA ISHLERLRQL DPINFETALL 300 LMRNLSINLT SPEFQDHRKL ITSYAVGSDK TKSDGNCNFS RIGKSENAIL SAX

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MLSLNPNPAQ GFYLFDPMNT NMGLPGLNPM PPPTTGAASA TAATSTTAAC TSSSAPANAA  60
SMSADDQSKK IRKPYTITKS RESWTEQEHD KFLEALQLFD RDWKKIEAFI GSKTVIQIRS  120
HAQKYFLKVQ KKGTSEHVPP PRPKRKATHP YPQKAPKSAA XVSQVAGPFQ SSSXLLEHGY  180
VYQPDSSIVL GTPVNAATLL SWSYNSVPPV NVXQTIKDEG RLSGPTVTHN SCYSSSNESN  240
PTNWKVSETV DRVDPGQPHR VLPDFAQVYK FIGSVFDPSA ISHLERLRQL DPINFETALL  300
LMRNLSINLT SPEFQDHRKL ITSYAVGSDK TKSDGNCNFS RIGKSENAIL SAX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.16616	0.0	bud\| fruit\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00423	DAP	Transfer from AT4G01280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008354011.2	0.0	protein REVEILLE 3-like
Swissprot	C0SVG5	1e-102	RVE5_ARATH; Protein REVEILLE 5
Swissprot	Q6R0H0	1e-103	RVE3_ARATH; Protein REVEILLE 3
Swissprot	Q8H0W3	1e-102	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A498KI09	0.0	A0A498KI09_MALDO; Uncharacterized protein
STRING	XP_008343412.1	0.0	(Malus domestica)
STRING	XP_008345636.1	0.0	(Malus domestica)
STRING	XP_008354011.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1119	33	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.1	1e-101	MYB_related family protein

Link Out ? help Back to Top
Phytozome	MDP0000325672

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]