PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000323121

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

G2-like

Protein Properties

Length: 291aa MW: 31616.2 Da PI: 8.4422

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000323121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.4	3.3e-33	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl MDP0000323121 47 KQRLRWTSDLHDRFVDAISQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.163	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-32	45	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-17	46	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-26	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	6.6E-8	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-24	133	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MYHAKKFSTA SLVPHKPQSS EELAIVGAVS GGSSAKSPTP SGGGSGKQRL RWTSDLHDRF 60 VDAISQLGGP DRATPKGVLR VMGVPGLTIY HVKSHLQKYR LAKYLPESPA DGSKDEKKGS 120 GDSLSCSDSS PGVQINEALR MQMEVQKRLH EQLEVQRQLQ MRIEAQGKYL QKIIEEQQKL 180 GGALKASDAL PSAEDKQKPA QFETKGDAFA TPSSPHKKQR VDDGLPDSCA TSNLPLKADQ 240 KNEFVGQWDR DLYGSDGGYG FGLQTEFKER DGGAEQKSPM ELDALCGSKQ X

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-23	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12338	0.0	bud\| cell culture\| fruit\| leaf\| root\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008392505.1	0.0	myb family transcription factor PHL7-like
Swissprot	Q9SJW0	2e-73	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A498I3V3	0.0	A0A498I3V3_MALDO; Uncharacterized protein
STRING	XP_008392505.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13013	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-68	G2-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000323121