PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000323119
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 307aa    MW: 33738.6 Da    PI: 6.9116
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000323119genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1085.1e-341872155
        G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                   k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  MDP0000323119 18 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 72
                   79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4851575IPR017930Myb domain
SuperFamilySSF466897.53E-181772IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-321773IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-251873IPR006447Myb domain, plants
PfamPF002491.2E-92071IPR001005SANT/Myb domain
PfamPF143791.6E-23104150IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDLVSGGNSL NNSNLASKQR LRWTHELHER FVDAVAQLGG PDRATPKGVL RVMGVQGLTI  60
YHVKSHLQKY RLAKYLPDSS SDGKKADKKE PGDVLSNLDG SPGMQITEAL KLQMEVQKRL  120
HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR LSGVLSEAPG SGHLARLSSD NCPESDNKTD  180
PATPAPTSEC PLQDKAAKEC APAKSISIDE SFSSHREPLT PDSGCHVGSP AESPKAERLT  240
KKLRVNIGEA FTDPEAVLTH QILESSLNSS YQQGHTAFLP REQFHPSSGI SFRNENQLEK  300
DAGSDMX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-231875158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-231875158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-231875158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-231875158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.3990.0bud| fruit| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008351138.10.0myb family transcription factor PHL7-like isoform X1
SwissprotQ9SJW01e-137PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A498IU660.0A0A498IU66_MALDO; Uncharacterized protein
STRINGXP_008351138.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86103343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-112G2-like family protein