PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000323095 | ||||||||
Common Name | HD23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 372aa MW: 42111 Da PI: 5.0959 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.5 | 9.4e-08 | 310 | 342 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + MDP0000323095 310 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 342 69*****************************87 PP | |||||||
2 | ELK | 23.8 | 1e-08 | 263 | 284 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L ++Y+++++++++E++ MDP0000323095 263 ELKHELXQGYKEKIVDIREEIL 284 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.8E-17 | 96 | 140 | IPR005540 | KNOX1 |
Pfam | PF03790 | 9.9E-16 | 98 | 135 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.1E-22 | 152 | 207 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.3E-16 | 157 | 206 | IPR005541 | KNOX2 |
Pfam | PF03789 | 4.2E-5 | 263 | 284 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.673 | 263 | 283 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0027 | 263 | 284 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.758 | 283 | 346 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.1E-11 | 285 | 350 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.25E-16 | 285 | 349 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.53E-11 | 286 | 347 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 290 | 349 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 303 | 342 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 372 aa Download sequence Send to blast |
MAFHHQQQQT PHEMAFHSFA EDQPPLSGAL TWLNNAAFRQ QNTSFGGLHD AGRNDDVVIS 60 XSGKSSSCSD RNRREISGYD GGEEEEGEDE LECESARFKA DIVGHPLYEQ LVSAHVSCLR 120 IATPVDQLPR IDEKLLQSQR VVDNYSALRA NGDVGVMDEK ELDLFMTNYV LLLCSFKEQL 180 QQHVRVHAME AVMACWELDQ SLQSLTGVST GEGTGATMSD DDDQLDSDIN SYDGSLDGPD 240 TMGFGPLVPT ESERSLMERV RQELKHELXQ GYKEKIVDIR EEILRKRRAG KLPGDTTSVL 300 KSWWQSHSKW PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHSNISS TSVLKSKRKS 360 NAGDMNNQRL KX |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.6546 | 0.0 | bud| fruit| leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001281052.1 | 0.0 | homeobox protein knotted-1-like 3 | ||||
Swissprot | P48000 | 1e-163 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | D9ZJ17 | 0.0 | D9ZJ17_MALDO; HD domain class transcription factor | ||||
STRING | XP_008362878.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008384685.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-153 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000323095 |
Entrez Gene | 103447281 |
Publications ? help Back to Top | |||
---|---|---|---|
|